HMJ53BGXB_n01_30976.TR4.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMJ53BGXB_n01_30976.TR4.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21985385
Sequences flagged as poor quality	0
Sequence length	151
%GC	56

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	49343	0.22443546019321475	No Hit
GGCCAACCGAGGCTCCGCGGCGCTGCCGTATCGTTCCGCCTGGGCGGGAT	36358	0.165373496984474	No Hit
TGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGTTCAGACATTTGGTGT	32658	0.14854413511521405	No Hit
GGGATCCCGAGGCCTCTCCAGTCCGCCGAGGGCGCACCACCGGCCCGTCT	32290	0.14687029588064981	No Hit
CCCAGGCATAGTTCACCATCTTTCGGGTCCTAACACGTGCGCTCGTGCTC	26950	0.12258143307474487	No Hit
GTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCA	25389	0.11548126175638952	No Hit
CTACTATCCAGCGAAACCACAGCCAAGGGAACGGGCTTGGCGGAATCAGC	22071	0.10038941778822615	No Hit
CCGCTACGGACCTCCACCAGAGTTTCCTCTGGCTTCGCCCTGCCCAGGCA	22035	0.10022567264571441	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGATG	13045	43.58627	145
GACATAC	4590	39.797985	9
GAGTCTA	6790	38.549026	2
GTAGCAT	8910	34.08863	7
TAGCATA	8925	33.787678	8
AGTCTAA	7810	33.32802	3
TGCCAGT	9075	32.517994	2
TTACGAC	7530	32.450085	5
GTTACGA	7455	32.386253	4
GGCCAAC	19215	30.683659	1
CCAGTAG	9955	30.370987	4
ACACGTA	3595	28.444477	145
AACCGAG	22600	28.393291	5
AACAGAC	6670	27.720127	5
TCTAACA	9365	27.717634	5
GTCTAAC	9460	27.514866	4
GCCAGTA	11000	27.485868	3
CCAACCG	22600	26.435337	3
TACGACT	9450	26.240686	6
CGCTCAG	6680	25.72385	4