FastQCFastQC Report
Tue 31 Oct 2023
HMHF2DRX3_n01_M12_RNA.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMHF2DRX3_n01_M12_RNA.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences111291506
Sequences flagged as poor quality0
Sequence length101
%GC52

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTACTCATGATCTC71245716.401720361300529No Hit
ACTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTACTCATGATCTC46927544.216632669163449No Hit
GCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTACTCATGATCTC5167360.46430856996400066No Hit
CCTGTCTCTTATACACATCTCCGAGCCCACGAGACAGTACTCATGATCTC2687430.2414766496196035No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)