FastQCFastQC Report
Sat 20 Oct 2018
HMGGHBGX7_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHMGGHBGX7_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences480537431
Sequences flagged as poor quality0
Sequence length8
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCGCAGC17633465736.695301057619375No Hit
CATCACTT11892786724.74892887168242No Hit
ACAATTCA10087060620.991206822346374No Hit
GTGTGGAG5517167311.481243591199037No Hit
GGGGGGGG170116533.5401306750649355No Hit
CATCACTA5069540.105497296838048No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)