HMGFWBGX7_n01_ZmTARGET.0830-6435-CHXDEX-02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMGFWBGX7_n01_ZmTARGET.0830-6435-CHXDEX-02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	18113315
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACTAATCGATCTCGTATGC	129472	0.7147890929959535	TruSeq Adapter, Index 3 (97% over 36bp)
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCT	35345	0.19513269658259685	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAAC	33667	0.1858687932054403	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	29853	0.16481245978441825	No Hit
CTCGAAGTTCATCACGCGCTCCCACTTGAAGCCCTCGGGGAAGGACAGCT	28604	0.15791697985708303	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTG	26901	0.14851505646536817	No Hit
CTCATCTTGATCTCGCCCTTCAGGGCGCCGTCCTCGGGGTACATCCGCTC	24299	0.13414993335013498	No Hit
GTCACCTTCAGCTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCC	23817	0.13148890746944997	No Hit
CCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTGGCGGCCCTCGGC	23164	0.12788382468918583	No Hit
CTTGACCTCGGCGTCGTAGTGGCCGCCGTCCTTCAGCTTCAGCCTCATCT	20347	0.11233172944875082	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTC	19747	0.10901924909935039	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	18447	0.10184220834231614	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTAATCG	17355	61.972713	33
TCGTATG	17565	60.41451	43
CGTATGC	17675	59.998917	44
TATGCCG	17760	59.55394	46
CGTCTGA	18515	59.03534	16
TAATCGA	18160	58.97503	34
CTCGTAT	16950	58.043198	42
ATCGGAA	19025	57.642006	2
ACGTCTG	19335	56.621838	15
GTCACTA	19035	56.504814	29
GATCGGA	19360	56.246513	1
GTATGCC	18940	55.99144	45
CACTAAT	19315	55.882866	31
TCGGAAG	19640	55.7662	3
ACTAATC	19330	55.73132	32
TCACTAA	19595	55.032875	30
CACGTCT	20115	54.44391	14
AGTCACT	19820	54.17871	28
AATCGAT	19445	53.961784	35
GTCTGAA	20710	52.812138	17