HMGFWBGX7_n01_ZmTARGET.0830-6435-CHXDEX-01.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMGFWBGX7_n01_ZmTARGET.0830-6435-CHXDEX-01.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47980517
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACGACATCTCGTATGC	76546	0.15953558816383742	TruSeq Adapter, Index 6 (97% over 36bp)
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCT	65435	0.1363782720390445	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	54611	0.11381911537134959	No Hit
CGCAAGACCGGCAACAGGATTCAATCTTAAGAAACTTTATTGCCAAATGT	54401	0.11338143771981449	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTC	52279	0.10895880926001693	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	50179	0.10458203274466592	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCACG	23860	51.020836	28
CGTCTGA	25640	47.885372	16
ATCGGAA	26965	45.77065	2
ACGTCTG	26955	45.704998	15
GTCACGA	27675	44.215034	29
GATCGGA	28275	43.5508	1
TCGGAAG	28915	42.85353	3
TCGTATG	15870	42.56388	43
CACGTCT	29140	42.313892	14
CGTATGC	15850	42.131794	44
TATGCCG	15835	41.663124	46
CTCGTAT	16495	39.062622	42
CACACGT	31865	38.93787	12
GTCTGAA	31910	38.838314	17
CAGTCAC	31875	38.48804	27
TCACGAC	32380	38.103813	30
ACGACAT	32450	37.275112	35
GTATGCC	19835	34.672802	45
GCACACG	37600	33.380566	11
CGGAAGA	38715	32.52156	4