HMGFWBGX7_n01_ZmTARGET.0830-6435-CHXDEX-01-.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMGFWBGX7_n01_ZmTARGET.0830-6435-CHXDEX-01-.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	47980517
Sequences flagged as poor quality	0
Sequence length	76
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGACGACATCTCGTATGC	76546	0.15953558816383742	TruSeq Adapter, Index 6 (97% over 36bp)
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCT	65435	0.1363782720390445	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	54611	0.11381911537134959	No Hit
CGCAAGACCGGCAACAGGATTCAATCTTAAGAAACTTTATTGCCAAATGT	54401	0.11338143771981449	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTC	52279	0.10895880926001693	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	50179	0.10458203274466592	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCACG	23940	50.96731	28
CGTCTGA	25660	47.943535	16
ATCGGAA	26975	45.844185	2
ACGTCTG	27125	45.54759	15
GTCACGA	27645	44.32633	29
GATCGGA	28295	43.630993	1
TCGGAAG	28900	42.936028	3
TCGTATG	15975	42.415573	43
CACGTCT	29260	42.25998	14
CGTATGC	16010	41.907494	44
TATGCCG	15870	41.791782	46
CACACGT	31895	38.967175	12
CTCGTAT	16640	38.869473	42
GTCTGAA	32050	38.75603	17
TCACGAC	32180	38.4494	30
CAGTCAC	32045	38.360325	27
ACGACAT	32330	37.43516	35
GTATGCC	19850	34.770027	45
GCACACG	37335	33.683228	11
CGGAAGA	38690	32.61475	4