HMGFWBGX7_n01_ZmTARGET.0830-6435-CHX-02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMGFWBGX7_n01_ZmTARGET.0830-6435-CHX-02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37387115
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCT	59083	0.15803038025266192	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	49872	0.1333935501575877	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTC	48210	0.1289481683729809	No Hit
CGCAAGACCGGCAACAGGATTCAATCTTAAGAAACTTTATTGCCAAATGT	46267	0.12375119075114516	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	45049	0.12049338388372571	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAAC	41605	0.11128165412067767	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTG	40328	0.10786603887462298	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	21680	49.981194	16
ACGTCTG	21995	49.249344	15
ATCGGAA	22785	47.3926	2
GATCGGA	23135	46.524136	1
CACGTCT	23655	46.059513	14
TCGGAAG	24000	45.212303	3
TATCGGG	6370	43.13098	39
AGTCACC	24860	42.871315	28
CACACGT	25720	42.41656	12
CATTTTA	25395	42.00746	34
GTCTGAA	26820	40.571987	17
CAGTCAC	27030	39.779175	27
GCACACG	30155	36.259502	11
CGGAAGA	30650	35.91688	4
TATCGCG	5590	35.1245	39
ACACGTC	31265	35.08408	13
TTTTATC	27960	35.03688	36
TTTATCG	14190	34.826675	37
AGCACAC	32625	33.632526	10
ATTTTAT	31715	33.44883	35