HMGFWBGX7_n01_ZmTARGET.0830-6435-CHX-02-.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMGFWBGX7_n01_ZmTARGET.0830-6435-CHX-02-.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	37387115
Sequences flagged as poor quality	0
Sequence length	76
%GC	53

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCT	59083	0.15803038025266192	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	49872	0.1333935501575877	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTC	48210	0.1289481683729809	No Hit
CGCAAGACCGGCAACAGGATTCAATCTTAAGAAACTTTATTGCCAAATGT	46267	0.12375119075114516	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	45049	0.12049338388372571	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAAC	41605	0.11128165412067767	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTG	40328	0.10786603887462298	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	21815	50.040874	16
ACGTCTG	22130	49.265194	15
ATCGGAA	23020	47.334656	2
GATCGGA	23415	46.401474	1
CACGTCT	23720	46.243195	14
TCGGAAG	24175	45.27611	3
TATCGGG	6345	43.190582	39
AGTCACC	25010	42.907944	28
CACACGT	25865	42.51716	12
CATTTTA	25550	42.095062	34
GTCTGAA	27075	40.487167	17
CAGTCAC	27195	39.795105	27
GCACACG	30235	36.476196	11
CGGAAGA	30875	35.938698	4
ACACGTC	31445	35.11707	13
TTTATCG	14150	35.098248	37
TTTTATC	28170	35.06143	36
TATCGCG	5675	34.96843	39
AGCACAC	32770	33.772163	10
ATTTTAT	31905	33.556778	35