HMGFWBGX7_n01_ZmTARGET.0830-183-CHXDEX-02.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMGFWBGX7_n01_ZmTARGET.0830-183-CHXDEX-02.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21952154
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCACTCAATCTCGTATGC	66611	0.3034371934526334	TruSeq Adapter, Index 7 (97% over 35bp)
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCT	41872	0.19074210211899933	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	36291	0.16531862886894835	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	33385	0.1520807479758023	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTC	31762	0.14468739605234185	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAAC	31366	0.14288347284735703	No Hit
CGCAAGACCGGCAACAGGATTCAATCTTAAGAAACTTTATTGCCAAATGT	28122	0.12810587972369364	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTG	26209	0.11939147292789583	No Hit
GTCACCTTCAGCTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCC	24065	0.10962477759585687	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	19460	56.888	16
ACGTCTG	19735	56.201435	15
ATCGGAA	19985	55.520836	2
GATCGGA	19975	55.320957	1
ACTCAAT	19860	54.366985	35
TCGGAAG	20720	53.703506	3
CACGTCT	20880	53.136147	14
TCGTATG	10880	52.242077	43
AGTCACC	21275	51.312473	28
GTCTGAA	21630	51.24551	17
CGTATGC	10815	51.16437	44
CTCGTAT	11680	51.060856	42
TATGCCG	10705	50.970833	46
CACTCAA	21770	50.336613	34
CCACTCA	22235	49.347	33
CACACGT	22750	48.769253	12
CAGTCAC	22660	48.145424	27
AATCTCG	15110	47.716007	39
ACCACTC	23690	46.316193	32
GTATGCC	12320	46.135754	45