HMGFWBGX7_n01_ZmTARGET.0830-183-CHXDEX-02-.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HMGFWBGX7_n01_ZmTARGET.0830-183-CHXDEX-02-.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	21952154
Sequences flagged as poor quality	0
Sequence length	76
%GC	55

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCACTCAATCTCGTATGC	66611	0.3034371934526334	TruSeq Adapter, Index 7 (97% over 35bp)
CTGGAACTGAGGGGACAGGATGTCCCAGGCGAAGGGCAGGGGGCCGCCCT	41872	0.19074210211899933	No Hit
CTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCCCTCGCCCTCGA	36291	0.16531862886894835	No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTAGGCGCCGGTGGAGTG	33385	0.1520807479758023	No Hit
GCCAAATGTTTGAACGATCGGGAATTGGATCCGGTACCGAGCTCGAATTC	31762	0.14468739605234185	No Hit
CGGGGATGTCGGCGGGGTGCTTCACGTAGGCCTTGGAGCCGTACTGGAAC	31366	0.14288347284735703	No Hit
CGCAAGACCGGCAACAGGATTCAATCTTAAGAAACTTTATTGCCAAATGT	28122	0.12810587972369364	No Hit
CCTCGATCTCGAACTCGTGGCCGTTCACGGAGCCCTCCATGCGCACCTTG	26209	0.11939147292789583	No Hit
GTCACCTTCAGCTTGGCGGTCTGGGTGCCCTCGTAGGGGCGGCCCTCGCC	24065	0.10962477759585687	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTCTGA	19505	57.079727	16
ACGTCTG	19805	56.320877	15
ATCGGAA	20025	55.654633	2
GATCGGA	20040	55.403503	1
ACTCAAT	19940	54.412132	35
TCGGAAG	20790	53.77534	3
CACGTCT	20930	53.310196	14
TCGTATG	10845	52.47521	43
AGTCACC	21315	51.46248	28
CGTATGC	10835	51.32833	44
GTCTGAA	21720	51.323208	17
TATGCCG	10745	51.106804	46
CTCGTAT	11690	51.07704	42
CACTCAA	21750	50.559895	34
CCACTCA	22315	49.389652	33
CACACGT	22780	48.93548	12
CAGTCAC	22750	48.201107	27
AATCTCG	15085	47.91108	39
GTATGCC	12290	46.504665	45
ACCACTC	23800	46.3374	32