[2022-07-14 15:57:56,207] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2022-07-14 15:57:56,208] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2022-07-14 15:57:56,208] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2022-07-14 15:57:56,209] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2022-07-14 15:57:56,209] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2022-07-14 15:57:56,209] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HM3L5DSX3/merged [2022-07-14 15:57:56,610] multiqc [WARNING] MultiQC Version v1.12 now available! [2022-07-14 15:57:56,610] multiqc [INFO ] This is MultiQC v1.9 [2022-07-14 15:57:56,610] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HM3L5DSX3/merged [2022-07-14 15:57:56,610] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HM3L5DSX3/merged [2022-07-14 15:57:56,610] multiqc [INFO ] Template : default [2022-07-14 15:57:56,610] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2022-07-14 15:57:56,610] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HM3L5DSX3/merged [2022-07-14 15:57:56,611] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2022-07-14 15:57:56,611] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-22158481/tmp2iver9ra [2022-07-14 15:57:56,732] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_8_fastqc.html [2022-07-14 15:57:56,734] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search 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[2022-07-14 15:57:57,157] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_11_fastqc.html [2022-07-14 15:57:57,159] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_11_fastqc.html [2022-07-14 15:57:57,216] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_6_fastqc.html [2022-07-14 15:57:57,217] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_6_fastqc.html [2022-07-14 15:57:57,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_21_fastqc.html [2022-07-14 15:57:57,270] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_21_fastqc.html [2022-07-14 15:57:57,322] multiqc [DEBUG ] File 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filesize limit: HM3L5DSX3_n02_CG_3_fastqc.html [2022-07-14 15:58:00,355] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_3_fastqc.html [2022-07-14 15:58:00,407] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_39_fastqc.html [2022-07-14 15:58:00,408] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_39_fastqc.html [2022-07-14 15:58:00,460] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_38_fastqc.html [2022-07-14 15:58:00,462] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_38_fastqc.html [2022-07-14 15:58:00,511] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_41_fastqc.html [2022-07-14 15:58:00,513] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_41_fastqc.html [2022-07-14 15:58:00,567] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_30_fastqc.html [2022-07-14 15:58:00,569] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_30_fastqc.html [2022-07-14 15:58:00,629] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_15_fastqc.html [2022-07-14 15:58:00,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_15_fastqc.html [2022-07-14 15:58:00,684] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_42_fastqc.html [2022-07-14 15:58:00,686] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_42_fastqc.html [2022-07-14 15:58:00,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_16_fastqc.html [2022-07-14 15:58:00,750] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_16_fastqc.html [2022-07-14 15:58:00,803] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_13_fastqc.html [2022-07-14 15:58:00,805] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_13_fastqc.html [2022-07-14 15:58:00,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_undetermined_fastqc.html [2022-07-14 15:58:00,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_undetermined_fastqc.html [2022-07-14 15:58:00,905] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_8_fastqc.html [2022-07-14 15:58:00,906] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_8_fastqc.html [2022-07-14 15:58:00,971] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_25_fastqc.html [2022-07-14 15:58:00,972] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_25_fastqc.html [2022-07-14 15:58:01,037] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_46_fastqc.html [2022-07-14 15:58:01,039] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_46_fastqc.html [2022-07-14 15:58:01,098] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_6_fastqc.html [2022-07-14 15:58:01,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_6_fastqc.html [2022-07-14 15:58:01,155] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_12_fastqc.html [2022-07-14 15:58:01,157] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_12_fastqc.html [2022-07-14 15:58:01,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_10_fastqc.html [2022-07-14 15:58:01,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_10_fastqc.html [2022-07-14 15:58:01,280] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_33_fastqc.html [2022-07-14 15:58:01,282] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_33_fastqc.html [2022-07-14 15:58:01,334] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_48_fastqc.html [2022-07-14 15:58:01,336] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_48_fastqc.html [2022-07-14 15:58:01,402] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_36_fastqc.html [2022-07-14 15:58:01,405] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_36_fastqc.html [2022-07-14 15:58:01,456] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_7_fastqc.html [2022-07-14 15:58:01,458] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_7_fastqc.html [2022-07-14 15:58:01,538] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_37_fastqc.html [2022-07-14 15:58:01,540] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_37_fastqc.html [2022-07-14 15:58:01,591] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_23_fastqc.html [2022-07-14 15:58:01,593] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_23_fastqc.html [2022-07-14 15:58:01,639] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_17_fastqc.html [2022-07-14 15:58:01,640] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_17_fastqc.html [2022-07-14 15:58:01,702] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_46_fastqc.html [2022-07-14 15:58:01,704] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_46_fastqc.html [2022-07-14 15:58:01,751] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_31_fastqc.html [2022-07-14 15:58:01,752] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_31_fastqc.html [2022-07-14 15:58:01,813] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_12_fastqc.html [2022-07-14 15:58:01,815] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_12_fastqc.html [2022-07-14 15:58:01,866] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_32_fastqc.html [2022-07-14 15:58:01,868] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_32_fastqc.html [2022-07-14 15:58:01,953] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_19_fastqc.html [2022-07-14 15:58:01,955] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_19_fastqc.html [2022-07-14 15:58:02,036] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_34_fastqc.html [2022-07-14 15:58:02,038] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_34_fastqc.html [2022-07-14 15:58:02,106] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_31_fastqc.html [2022-07-14 15:58:02,107] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_31_fastqc.html [2022-07-14 15:58:02,165] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_37_fastqc.html [2022-07-14 15:58:02,166] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_37_fastqc.html [2022-07-14 15:58:02,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_45_fastqc.html [2022-07-14 15:58:02,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_45_fastqc.html [2022-07-14 15:58:02,271] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_48_fastqc.html [2022-07-14 15:58:02,273] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_48_fastqc.html [2022-07-14 15:58:02,321] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_1_fastqc.html [2022-07-14 15:58:02,323] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n02_CG_1_fastqc.html [2022-07-14 15:58:02,377] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_29_fastqc.html [2022-07-14 15:58:02,379] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_29_fastqc.html [2022-07-14 15:58:02,428] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_40_fastqc.html [2022-07-14 15:58:02,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_40_fastqc.html [2022-07-14 15:58:02,508] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_27_fastqc.html [2022-07-14 15:58:02,510] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_27_fastqc.html [2022-07-14 15:58:02,566] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_47_fastqc.html [2022-07-14 15:58:02,567] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HM3L5DSX3_n01_CG_47_fastqc.html [2022-07-14 15:58:02,908] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2022-07-14 15:58:02,909] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2022-07-14 15:58:02,918] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2022-07-14 15:58:02,941] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 49 samples (table) [2022-07-14 15:58:02,950] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2022-07-14 15:58:02,955] multiqc [DEBUG ] No samples found: conpair [2022-07-14 15:58:02,960] multiqc [DEBUG ] No samples found: peddy [2022-07-14 15:58:02,964] multiqc [DEBUG ] No samples found: somalier [2022-07-14 15:58:02,968] multiqc [DEBUG ] No samples found: methylQA [2022-07-14 15:58:02,976] multiqc [DEBUG ] No samples found: mosdepth [2022-07-14 15:58:02,980] multiqc [DEBUG ] No samples found: phantompeakqualtools [2022-07-14 15:58:02,983] multiqc [DEBUG ] No samples found: qualimap [2022-07-14 15:58:02,987] multiqc [DEBUG ] No samples found: preseq [2022-07-14 15:58:02,992] multiqc [DEBUG ] No samples found: quast [2022-07-14 15:58:02,997] multiqc [DEBUG ] No samples found: qorts [2022-07-14 15:58:03,002] multiqc [DEBUG ] No samples found: rna_seqc [2022-07-14 15:58:03,006] multiqc [DEBUG ] No samples found: rockhopper [2022-07-14 15:58:03,011] multiqc [DEBUG ] No samples found: rsem [2022-07-14 15:58:03,021] multiqc [DEBUG ] No samples found: rseqc [2022-07-14 15:58:03,025] multiqc [DEBUG ] No samples found: busco [2022-07-14 15:58:03,029] multiqc [DEBUG ] No samples found: goleft_indexcov [2022-07-14 15:58:03,034] multiqc [DEBUG ] No samples found: disambiguate [2022-07-14 15:58:03,038] multiqc [DEBUG ] No samples found: supernova [2022-07-14 15:58:03,051] multiqc [DEBUG ] No samples found: deeptools [2022-07-14 15:58:03,055] multiqc [DEBUG ] No samples found: sargasso [2022-07-14 15:58:03,059] multiqc [DEBUG ] No samples found: verifybamid [2022-07-14 15:58:03,063] multiqc [DEBUG ] No samples found: mirtrace [2022-07-14 15:58:03,068] multiqc [DEBUG ] No samples found: happy [2022-07-14 15:58:03,073] multiqc [DEBUG ] No samples found: mirtop [2022-07-14 15:58:03,079] multiqc [DEBUG ] No samples found: homer [2022-07-14 15:58:03,083] multiqc [DEBUG ] No samples found: macs2 [2022-07-14 15:58:03,087] multiqc [DEBUG ] No samples found: theta2 [2022-07-14 15:58:03,091] multiqc [DEBUG ] No samples found: snpeff [2022-07-14 15:58:03,097] multiqc [DEBUG ] No samples found: gatk [2022-07-14 15:58:03,101] multiqc [DEBUG ] No samples found: htseq [2022-07-14 15:58:03,106] multiqc [DEBUG ] No samples found: bcftools [2022-07-14 15:58:03,112] multiqc [DEBUG ] No samples found: featureCounts [2022-07-14 15:58:03,117] multiqc [DEBUG ] No samples found: fgbio [2022-07-14 15:58:03,130] multiqc [DEBUG ] No samples found: dragen [2022-07-14 15:58:03,134] multiqc [DEBUG ] No samples found: dedup [2022-07-14 15:58:03,139] multiqc [DEBUG ] No samples found: damageprofiler [2022-07-14 15:58:03,161] multiqc [DEBUG ] No samples found: biobambam2 [2022-07-14 15:58:03,165] multiqc [DEBUG ] No samples found: mtnucratio [2022-07-14 15:58:03,167] multiqc [DEBUG ] No samples found: picard [2022-07-14 15:58:03,172] multiqc [DEBUG ] No samples found: prokka [2022-07-14 15:58:03,176] multiqc [DEBUG ] No samples found: samblaster [2022-07-14 15:58:03,184] multiqc [DEBUG ] No samples found: samtools [2022-07-14 15:58:03,188] multiqc [DEBUG ] No samples found: sexdeterrmine [2022-07-14 15:58:03,193] multiqc [DEBUG ] No samples found: bamtools [2022-07-14 15:58:03,198] multiqc [DEBUG ] No samples found: jellyfish [2022-07-14 15:58:03,205] multiqc [DEBUG ] No samples found: vcftools [2022-07-14 15:58:03,209] multiqc [DEBUG ] No samples found: longranger [2022-07-14 15:58:03,213] multiqc [DEBUG ] No samples found: stacks [2022-07-14 15:58:03,218] multiqc [DEBUG ] No samples found: varscan2 [2022-07-14 15:58:03,231] multiqc [DEBUG ] No samples found: bbmap [2022-07-14 15:58:03,235] multiqc [DEBUG ] No samples found: bismark [2022-07-14 15:58:03,240] multiqc [DEBUG ] No samples found: biscuit [2022-07-14 15:58:03,245] multiqc [DEBUG ] No samples found: hicexplorer [2022-07-14 15:58:03,249] multiqc [DEBUG ] No samples found: hicup [2022-07-14 15:58:03,253] multiqc [DEBUG ] No samples found: hicpro [2022-07-14 15:58:03,258] multiqc [DEBUG ] No samples found: salmon [2022-07-14 15:58:03,262] multiqc [DEBUG ] No samples found: kallisto [2022-07-14 15:58:03,266] multiqc [DEBUG ] No samples found: slamdunk [2022-07-14 15:58:03,270] multiqc [DEBUG ] No samples found: star [2022-07-14 15:58:03,275] multiqc [DEBUG ] No samples found: hisat2 [2022-07-14 15:58:03,283] multiqc [DEBUG ] No samples found: tophat [2022-07-14 15:58:03,287] multiqc [DEBUG ] No samples found: bowtie2 [2022-07-14 15:58:03,292] multiqc [DEBUG ] No samples found: bowtie1 [2022-07-14 15:58:03,297] multiqc [DEBUG ] No samples found: snpsplit [2022-07-14 15:58:03,301] multiqc [DEBUG ] No samples found: kat [2022-07-14 15:58:03,306] multiqc [DEBUG ] No samples found: leehom [2022-07-14 15:58:03,310] multiqc [DEBUG ] No samples found: adapterRemoval [2022-07-14 15:58:03,314] multiqc [DEBUG ] No samples found: clipandmerge [2022-07-14 15:58:03,319] multiqc [DEBUG ] No samples found: cutadapt [2022-07-14 15:58:03,322] multiqc [DEBUG ] No samples found: flexbar [2022-07-14 15:58:03,327] multiqc [DEBUG ] No samples found: kaiju [2022-07-14 15:58:03,331] multiqc [DEBUG ] No samples found: kraken [2022-07-14 15:58:03,335] multiqc [DEBUG ] No samples found: malt [2022-07-14 15:58:03,339] multiqc [DEBUG ] No samples found: trimmomatic [2022-07-14 15:58:03,344] multiqc [DEBUG ] No samples found: sickle [2022-07-14 15:58:03,349] multiqc [DEBUG ] No samples found: skewer [2022-07-14 15:58:03,353] multiqc [DEBUG ] No samples found: sortmerna [2022-07-14 15:58:03,357] multiqc [DEBUG ] No samples found: biobloomtools [2022-07-14 15:58:03,361] multiqc [DEBUG ] No samples found: fastq_screen [2022-07-14 15:58:03,365] multiqc [DEBUG ] No samples found: afterqc [2022-07-14 15:58:03,370] multiqc [DEBUG ] No samples found: fastp [2022-07-14 15:58:19,767] multiqc.modules.fastqc.fastqc [INFO ] Found 98 reports [2022-07-14 15:58:20,540] multiqc [DEBUG ] No samples found: pycoqc [2022-07-14 15:58:20,545] multiqc [DEBUG ] No samples found: minionqc [2022-07-14 15:58:20,550] multiqc [DEBUG ] No samples found: multivcfanalyzer [2022-07-14 15:58:20,554] multiqc [DEBUG ] No samples found: clusterflow [2022-07-14 15:58:20,559] multiqc [DEBUG ] No samples found: bcl2fastq [2022-07-14 15:58:20,563] multiqc [DEBUG ] No samples found: interop [2022-07-14 15:58:20,567] multiqc [DEBUG ] No samples found: ivar [2022-07-14 15:58:20,572] multiqc [DEBUG ] No samples found: flash [2022-07-14 15:58:20,576] multiqc [DEBUG ] No samples found: seqyclean [2022-07-14 15:58:20,577] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2022-07-14 15:58:20,577] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2022-07-14 15:58:20,577] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2022-07-14 15:58:20,577] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2022-07-14 15:58:20,689] multiqc [INFO ] Compressing plot data [2022-07-14 15:58:22,222] multiqc [INFO ] Report : multiqc_report.html [2022-07-14 15:58:22,222] multiqc [INFO ] Data : multiqc_data [2022-07-14 15:58:22,223] multiqc [DEBUG ] Moving data file from '/state/partition1/job-22158481/tmp2iver9ra/multiqc_data' to '/scratch/gencore/logs/html/HM3L5DSX3/merged/multiqc_data' [2022-07-14 15:58:22,347] multiqc [INFO ] MultiQC complete