FastQCFastQC Report
Thu 7 Feb 2019
HLYKLBGX9_n01_Sample_21.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLYKLBGX9_n01_Sample_21.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences96685
Sequences flagged as poor quality0
Sequence length151
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[FAIL]Adapter Content

Adapter graph

[WARN]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTTATAG300.001930437372.51
TATACAG350.003556765462.1428575
TACTATA450.00961301248.3333362
CTCTCAC450.00961301248.3333363
TATTACA604.922792E-448.3333322
CACAATG700.001051905941.428577
GTATTAG800.002027541636.251
AATGCCC850.002729805434.1176453
ATTACAC900.003612161132.2222253
TTACACA900.003612161132.2222254
CCAAAGC1255.119888E-429.0000023
CTTATTT1050.007674610227.6190471
CACGAGC1500.001484548424.166666145
AGGCTGC2659.238905E-519.150942145
TGTGCGA600.00469737614.50000110-14
CACCCAC650.00798318813.38461535-39
AAGGGGG6852.519846E-811.642336145
GGGGGGG183850.08.596683145
ATGGGGG2159.835494E-47.4186053140-144
TGGGGGG3200.00156298656.796875145