FastQCFastQC Report
Thu 7 Feb 2019
HLYKLBGX9_n01_Sample_17.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLYKLBGX9_n01_Sample_17.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20909378
Sequences flagged as poor quality0
Sequence length151
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
GTATATA310400.015.3216351
GTATTAG149450.014.7954071
TATACTG169850.013.7439075
GTATTAT209550.013.3889441
GGATCGT36650.013.25326258
CCTATAC82350.012.9411733
GTATTAA190800.012.8428471
GTATTAC104400.012.7773361
GTATAGA133800.012.7331171
CTAATAC144750.012.7214033
TATATAC313500.012.6493923
TATACAG185950.012.5929135
GTGTATA236950.012.5444081
TCTATAC131000.012.4517713
GTATACG18700.012.4059891
CTATACT133850.012.2949674
GTATAGG81150.012.14991951
ATAATAC205050.012.0916693
GTCCTAG107350.012.0885441
ATATACT238950.011.9842254
Produced by FastQC (version 0.11.5)