FastQCFastQC Report
Wed 8 Feb 2023
HLWJFDRX2_n01_7R_2-4.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLWJFDRX2_n01_7R_2-4.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1701533
Sequences flagged as poor quality0
Sequence length101
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGCTGTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGT47330.2781609289975569No Hit
GCTGTCTACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAA29720.17466602175802645No Hit
CGACCCCAGGTCAGGCGGGATTACCCGCTGAGTTTAAGCATATCAATAAG24870.146162313631296No Hit
AGTTGGTATGGAAGAACTGCTGCTTAGCGGGAAATCCTTCTCTATACAAG23900.14046157200594994No Hit
GGGCGGTAAATTCCGTCCAAGGCTAAATACGGGCGAGAGACCGATAGCGA23730.13946247295820888No Hit
ACGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGT17550.10314228404621009No Hit
CTTCTCTATACAAGTTCTCGGAACAGGTTTTAGAACAGAACTTCGATAGG17180.10096777435406777No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)