[2023-07-28 18:26:28,035] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-07-28 18:26:28,035] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-07-28 18:26:28,035] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-07-28 18:26:28,037] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-07-28 18:26:28,037] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-07-28 18:26:28,038] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HLTLYDMXY/merged [2023-07-28 18:26:28,181] multiqc [WARNING] MultiQC Version v1.14 now available! [2023-07-28 18:26:28,181] multiqc [INFO ] This is MultiQC v1.9 [2023-07-28 18:26:28,181] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HLTLYDMXY/merged [2023-07-28 18:26:28,181] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HLTLYDMXY/merged [2023-07-28 18:26:28,181] multiqc [INFO ] Template : default [2023-07-28 18:26:28,181] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-07-28 18:26:28,181] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HLTLYDMXY/merged [2023-07-28 18:26:28,182] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-07-28 18:26:28,182] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-35807966/tmpgt8gemx9 [2023-07-28 18:26:28,346] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P1_H6_n_fastqc.html [2023-07-28 18:26:28,349] multiqc [DEBUG ] File ignored by longranger/invocation 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HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_H4_n_fastqc.html [2023-07-28 18:26:59,123] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_H4_n_fastqc.html [2023-07-28 18:26:59,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P1_E4_n_fastqc.html [2023-07-28 18:26:59,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P1_E4_n_fastqc.html [2023-07-28 18:26:59,246] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P2_E12_n_fastqc.html [2023-07-28 18:26:59,248] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P2_E12_n_fastqc.html [2023-07-28 18:26:59,313] multiqc [DEBUG ] 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HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_F10_n_fastqc.html [2023-07-28 18:26:59,502] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_A5_n_fastqc.html [2023-07-28 18:26:59,503] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_A5_n_fastqc.html [2023-07-28 18:26:59,561] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P1_H4_n_fastqc.html [2023-07-28 18:26:59,563] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P1_H4_n_fastqc.html [2023-07-28 18:26:59,654] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_C2_n_fastqc.html [2023-07-28 18:26:59,656] multiqc [DEBUG ] File ignored 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HLTLYDMXY_n01_CIVR__Ferret_mRNA_P2_E12_n_fastqc.html [2023-07-28 18:26:59,894] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P2_E12_n_fastqc.html [2023-07-28 18:26:59,956] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_G6_n_fastqc.html [2023-07-28 18:26:59,958] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_G6_n_fastqc.html [2023-07-28 18:27:00,015] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P2_F3_n_fastqc.html [2023-07-28 18:27:00,017] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P2_F3_n_fastqc.html [2023-07-28 18:27:00,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_G7_n_fastqc.html [2023-07-28 18:27:00,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_G7_n_fastqc.html [2023-07-28 18:27:00,123] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_C6_n_fastqc.html [2023-07-28 18:27:00,125] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_C6_n_fastqc.html [2023-07-28 18:27:00,219] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P2_E11_n_fastqc.html [2023-07-28 18:27:00,221] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P2_E11_n_fastqc.html [2023-07-28 18:27:00,285] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P2_E5_n_fastqc.html [2023-07-28 18:27:00,287] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P2_E5_n_fastqc.html [2023-07-28 18:27:00,345] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_A8_new_fastqc.html [2023-07-28 18:27:00,347] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_A8_new_fastqc.html [2023-07-28 18:27:00,408] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_H1_n_fastqc.html [2023-07-28 18:27:00,410] multiqc [DEBUG ] File 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HLTLYDMXY_n01_CIVR__Ferret_mRNA_P2_G9_n_fastqc.html [2023-07-28 18:27:00,584] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P2_G9_n_fastqc.html [2023-07-28 18:27:00,626] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P3_D4_n_fastqc.html [2023-07-28 18:27:00,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P3_D4_n_fastqc.html [2023-07-28 18:27:00,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_D6_n_fastqc.html [2023-07-28 18:27:00,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n01_CIVR__Ferret_mRNA_P1_D6_n_fastqc.html [2023-07-28 18:27:00,746] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_B5_n_fastqc.html [2023-07-28 18:27:00,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLTLYDMXY_n02_CIVR__Ferret_mRNA_P3_B5_n_fastqc.html [2023-07-28 18:27:01,139] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-07-28 18:27:01,141] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-07-28 18:27:01,153] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-07-28 18:27:01,163] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-07-28 18:27:01,274] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 250 samples (table) [2023-07-28 18:27:01,285] multiqc [DEBUG ] No samples found: conpair [2023-07-28 18:27:01,291] multiqc [DEBUG ] No samples found: peddy [2023-07-28 18:27:01,304] multiqc [DEBUG ] No samples found: somalier [2023-07-28 18:27:01,326] multiqc [DEBUG ] No samples found: methylQA [2023-07-28 18:27:01,343] multiqc [DEBUG ] No samples found: mosdepth [2023-07-28 18:27:01,350] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-07-28 18:27:01,354] multiqc [DEBUG ] No samples found: qualimap [2023-07-28 18:27:01,372] multiqc [DEBUG ] No samples found: preseq [2023-07-28 18:27:01,391] multiqc [DEBUG ] No samples found: quast [2023-07-28 18:27:01,396] multiqc [DEBUG ] No samples found: qorts [2023-07-28 18:27:01,403] multiqc [DEBUG ] No samples found: rna_seqc [2023-07-28 18:27:01,409] multiqc [DEBUG ] No samples found: rockhopper [2023-07-28 18:27:01,414] multiqc [DEBUG ] No samples found: rsem [2023-07-28 18:27:01,430] multiqc [DEBUG ] No samples found: rseqc [2023-07-28 18:27:01,436] multiqc [DEBUG ] No samples found: busco [2023-07-28 18:27:01,456] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-07-28 18:27:01,462] multiqc [DEBUG ] No samples found: disambiguate [2023-07-28 18:27:01,467] multiqc [DEBUG ] No samples found: supernova [2023-07-28 18:27:01,487] multiqc [DEBUG ] No samples found: deeptools [2023-07-28 18:27:01,495] multiqc [DEBUG ] No samples found: sargasso [2023-07-28 18:27:01,506] multiqc [DEBUG ] No samples found: verifybamid [2023-07-28 18:27:01,522] multiqc [DEBUG ] No samples found: mirtrace [2023-07-28 18:27:01,527] multiqc [DEBUG ] No samples found: happy [2023-07-28 18:27:01,536] multiqc [DEBUG ] No samples found: mirtop [2023-07-28 18:27:01,548] multiqc [DEBUG ] No samples found: homer [2023-07-28 18:27:01,554] multiqc [DEBUG ] No samples found: macs2 [2023-07-28 18:27:01,563] multiqc [DEBUG ] No samples found: theta2 [2023-07-28 18:27:01,573] multiqc [DEBUG ] No samples found: snpeff [2023-07-28 18:27:01,588] multiqc [DEBUG ] No samples found: gatk [2023-07-28 18:27:01,593] multiqc [DEBUG ] No samples found: htseq [2023-07-28 18:27:01,609] multiqc [DEBUG ] No samples found: bcftools [2023-07-28 18:27:01,617] multiqc [DEBUG ] No samples found: featureCounts [2023-07-28 18:27:01,641] multiqc [DEBUG ] No samples found: fgbio [2023-07-28 18:27:01,664] multiqc [DEBUG ] No samples found: dragen [2023-07-28 18:27:01,672] multiqc [DEBUG ] No samples found: dedup [2023-07-28 18:27:01,692] multiqc [DEBUG ] No samples found: damageprofiler [2023-07-28 18:27:01,721] multiqc [DEBUG ] No samples found: biobambam2 [2023-07-28 18:27:01,726] multiqc [DEBUG ] No samples found: mtnucratio [2023-07-28 18:27:01,729] multiqc [DEBUG ] No samples found: picard [2023-07-28 18:27:01,735] multiqc [DEBUG ] No samples found: prokka [2023-07-28 18:27:01,750] multiqc [DEBUG ] No samples found: samblaster [2023-07-28 18:27:01,761] multiqc [DEBUG ] No samples found: samtools [2023-07-28 18:27:01,768] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-07-28 18:27:01,780] multiqc [DEBUG ] No samples found: bamtools [2023-07-28 18:27:01,791] multiqc [DEBUG ] No samples found: jellyfish [2023-07-28 18:27:01,805] multiqc [DEBUG ] No samples found: vcftools [2023-07-28 18:27:01,823] multiqc [DEBUG ] No samples found: longranger [2023-07-28 18:27:01,843] multiqc [DEBUG ] No samples found: stacks [2023-07-28 18:27:01,859] multiqc [DEBUG ] No samples found: varscan2 [2023-07-28 18:27:01,897] multiqc [DEBUG ] No samples found: bbmap [2023-07-28 18:27:01,904] multiqc [DEBUG ] No samples found: bismark [2023-07-28 18:27:01,915] multiqc [DEBUG ] No samples found: biscuit [2023-07-28 18:27:01,921] multiqc [DEBUG ] No samples found: hicexplorer [2023-07-28 18:27:01,930] multiqc [DEBUG ] No samples found: hicup [2023-07-28 18:27:01,941] multiqc [DEBUG ] No samples found: hicpro [2023-07-28 18:27:01,951] multiqc [DEBUG ] No samples found: salmon [2023-07-28 18:27:01,963] multiqc [DEBUG ] No samples found: kallisto [2023-07-28 18:27:01,972] multiqc [DEBUG ] No samples found: slamdunk [2023-07-28 18:27:01,983] multiqc [DEBUG ] No samples found: star [2023-07-28 18:27:01,989] multiqc [DEBUG ] No samples found: hisat2 [2023-07-28 18:27:01,995] multiqc [DEBUG ] No samples found: tophat [2023-07-28 18:27:02,011] multiqc [DEBUG ] No samples found: bowtie2 [2023-07-28 18:27:02,023] multiqc [DEBUG ] No samples found: bowtie1 [2023-07-28 18:27:02,044] multiqc [DEBUG ] No samples found: snpsplit [2023-07-28 18:27:02,067] multiqc [DEBUG ] No samples found: kat [2023-07-28 18:27:02,073] multiqc [DEBUG ] No samples found: leehom [2023-07-28 18:27:02,081] multiqc [DEBUG ] No samples found: adapterRemoval [2023-07-28 18:27:02,103] multiqc [DEBUG ] No samples found: clipandmerge [2023-07-28 18:27:02,126] multiqc [DEBUG ] No samples found: cutadapt [2023-07-28 18:27:02,133] multiqc [DEBUG ] No samples found: flexbar [2023-07-28 18:27:02,143] multiqc [DEBUG ] No samples found: kaiju [2023-07-28 18:27:02,158] multiqc [DEBUG ] No samples found: kraken [2023-07-28 18:27:02,171] multiqc [DEBUG ] No samples found: malt [2023-07-28 18:27:02,178] multiqc [DEBUG ] No samples found: trimmomatic [2023-07-28 18:27:02,192] multiqc [DEBUG ] No samples found: sickle [2023-07-28 18:27:02,200] multiqc [DEBUG ] No samples found: skewer [2023-07-28 18:27:02,211] multiqc [DEBUG ] No samples found: sortmerna [2023-07-28 18:27:02,216] multiqc [DEBUG ] No samples found: biobloomtools [2023-07-28 18:27:02,224] multiqc [DEBUG ] No samples found: fastq_screen [2023-07-28 18:27:02,234] multiqc [DEBUG ] No samples found: afterqc [2023-07-28 18:27:02,240] multiqc [DEBUG ] No samples found: fastp [2023-07-28 18:28:09,659] multiqc.modules.fastqc.fastqc [INFO ] Found 500 reports [2023-07-28 18:28:51,437] multiqc [DEBUG ] No samples found: pycoqc [2023-07-28 18:28:51,448] multiqc [DEBUG ] No samples found: minionqc [2023-07-28 18:28:51,458] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-07-28 18:28:51,465] multiqc [DEBUG ] No samples found: clusterflow [2023-07-28 18:28:51,470] multiqc [DEBUG ] No samples found: bcl2fastq [2023-07-28 18:28:51,476] multiqc [DEBUG ] No samples found: interop [2023-07-28 18:28:51,488] multiqc [DEBUG ] No samples found: ivar [2023-07-28 18:28:51,499] multiqc [DEBUG ] No samples found: flash [2023-07-28 18:28:51,519] multiqc [DEBUG ] No samples found: seqyclean [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-07-28 18:28:51,520] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-07-28 18:28:51,524] multiqc.plots.table [DEBUG ] Plotting beeswarm instead of table, 500 samples [2023-07-28 18:28:51,526] multiqc [INFO ] Compressing plot data [2023-07-28 18:28:51,810] multiqc [INFO ] Report : multiqc_report.html [2023-07-28 18:28:51,833] multiqc [INFO ] Data : multiqc_data [2023-07-28 18:28:51,833] multiqc [DEBUG ] Moving data file from '/state/partition1/job-35807966/tmpgt8gemx9/multiqc_data' to '/scratch/gencore/logs/html/HLTLYDMXY/merged/multiqc_data' [2023-07-28 18:28:51,982] multiqc [INFO ] MultiQC complete