Sample basic_statistics Sequences flagged as poor quality per_sequence_quality_scores per_sequence_gc_content kmer_content per_base_sequence_quality per_base_n_content File type Encoding overrepresented_sequences per_base_sequence_content sequence_duplication_levels %GC adapter_content sequence_length_distribution Total Sequences Sequence length Filename total_deduplicated_percentage avg_sequence_length per_tile_sequence_quality HLTFNBGX5_n01_gdna pass 0.0 pass fail fail pass pass Conventional base calls Sanger / Illumina 1.9 fail fail pass 58.0 fail pass 14419451.0 75.0 HLTFNBGX5_n01_gdna.fastq.gz 76.77909860548233 75.0 pass HLTFNBGX5_n01_gdna_200 pass 0.0 pass fail fail pass pass Conventional base calls Sanger / Illumina 1.9 warn warn pass 55.0 fail pass 53051427.0 75.0 HLTFNBGX5_n01_gdna_200.fastq.gz 72.93710655919321 75.0 pass HLTFNBGX5_n01_mdex_gr_dam_200_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn warn fail 48.0 warn pass 29311684.0 75.0 HLTFNBGX5_n01_mdex_gr_dam_200_r2.fastq.gz 24.638351747057115 75.0 pass HLTFNBGX5_n01_mdex_gr_dam_250_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn warn fail 48.0 pass pass 30772440.0 75.0 HLTFNBGX5_n01_mdex_gr_dam_250_r2.fastq.gz 23.075722723008525 75.0 pass HLTFNBGX5_n01_mdex_gr_dam_bzip1_200_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail fail 47.0 warn pass 29732339.0 75.0 HLTFNBGX5_n01_mdex_gr_dam_bzip1_200_r2.fastq.gz 26.235475934805812 75.0 pass HLTFNBGX5_n01_mdex_gr_dam_bzip1_250_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail fail 47.0 warn pass 23270971.0 75.0 HLTFNBGX5_n01_mdex_gr_dam_bzip1_250_r2.fastq.gz 27.138251968681455 75.0 pass HLTFNBGX5_n01_mdex_gr_dam_bzip1_r2 pass 0.0 pass warn fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail warn 50.0 pass pass 863467.0 75.0 HLTFNBGX5_n01_mdex_gr_dam_bzip1_r2.fastq.gz 59.21170043873801 75.0 pass HLTFNBGX5_n01_mdex_gr_dam_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail warn 51.0 pass pass 947875.0 75.0 HLTFNBGX5_n01_mdex_gr_dam_r2.fastq.gz 55.260148695777964 75.0 pass HLTFNBGX5_n01_pdex_gr_dam_200_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail fail 47.0 warn pass 37467023.0 75.0 HLTFNBGX5_n01_pdex_gr_dam_200_r2.fastq.gz 38.32807490838087 75.0 pass HLTFNBGX5_n01_pdex_gr_dam_250_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail fail 46.0 pass pass 23984591.0 75.0 HLTFNBGX5_n01_pdex_gr_dam_250_r2.fastq.gz 40.65565363183654 75.0 pass HLTFNBGX5_n01_pdex_gr_dam_bzip1_200_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail fail 48.0 warn pass 29481956.0 75.0 HLTFNBGX5_n01_pdex_gr_dam_bzip1_200_r2.fastq.gz 27.797849254634233 75.0 pass HLTFNBGX5_n01_pdex_gr_dam_bzip1_250_r2 pass 0.0 pass pass fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail fail 49.0 pass pass 24112724.0 75.0 HLTFNBGX5_n01_pdex_gr_dam_bzip1_250_r2.fastq.gz 25.445046930439254 75.0 pass HLTFNBGX5_n01_pdex_gr_dam_bzip1_r2 pass 0.0 pass warn fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail fail 51.0 pass pass 1973060.0 75.0 HLTFNBGX5_n01_pdex_gr_dam_bzip1_r2.fastq.gz 48.39662318967791 75.0 pass HLTFNBGX5_n01_pdex_gr_dam_r2 pass 0.0 pass warn fail pass pass Conventional base calls Sanger / Illumina 1.9 warn fail warn 49.0 pass pass 1594132.0 75.0 HLTFNBGX5_n01_pdex_gr_dam_r2.fastq.gz 62.16845569038847 75.0 pass