HLTFNBGX5_n01_gdna.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLTFNBGX5_n01_gdna.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	14419451
Sequences flagged as poor quality	0
Sequence length	75
%GC	58

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	164987	1.1441975148707118	No Hit
TCCTCGGCCGCGACCACGCTGCCCTATAGTGAGTCGTATTAGATCCTCGGCCGCGACCAGATCGGAAGAGCACAC	25451	0.17650463946234846	No Hit
ACCCTTATTCCACTGCACCGTCCTCGGCCGCGACCACGCTGCCCTATAGTGAGTCGTATTAGATCCTCGGCCGCG	20638	0.14312611485693874	No Hit
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTGCTTGAAAAAAAAAAGG	18627	0.12917967542592296	RNA PCR Primer, Index 29 (100% over 43bp)
TCCTCGGCCGCGACCAGATCGGAAGAGCACACGTCTGAACTCCAGTCACCAACTAATCTCGTATGCCGTCTTCTG	15059	0.10443532142797947	RNA PCR Primer, Index 29 (100% over 39bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CACCGTC	32070	46.912285	16
ACCGTCC	32560	46.16427	17
CCGTCCT	32290	46.15556	18
ATGCGGC	3490	42.37651	15
GTATGCG	3545	42.302383	13
TATGCGG	3505	42.096794	14
GATAAGT	3670	41.70741	8
CGTCCTC	36160	41.27486	19
ATAAGTA	3790	40.022873	9
TAAGTAT	3765	40.013935	10
ACCGAAG	4135	39.19155	2
AGTATGC	3835	39.013615	12
CACCGAT	7735	38.50829	16
CACCGAA	4245	38.354935	1
ACCCTTA	69750	38.288284	1
AAGTATG	3930	38.158253	11
TGCACCG	67590	37.947556	14
CCCTTAT	71595	37.430035	2
CTGCACC	69115	37.4094	13
CCTTATT	71320	37.380714	3