FastQCFastQC Report
Sat 3 Dec 2022
HLTFMDRX2_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLTFMDRX2_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1881433919
Sequences flagged as poor quality0
Sequence length10
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCGTTGGAT56126284329.83165325829336No Hit
GCTACAAAGC41018097421.801508405781007No Hit
ACGACTACCA40446288421.497586490572886No Hit
CGCGCACTTA37432580419.895772060862903No Hit
GGGGGGGGGG638650483.3944879676637743No Hit
TCGTTGGATA24242530.12885134978795926No Hit
ACGACTACAA20445430.10866940259515966No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)