HLNTYAFXY_n02_surD_T3_R2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNTYAFXY_n02_surD_T3_R2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	807207
Sequences flagged as poor quality	0
Sequence length	76
%GC	47

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATC	13779	1.706997089965771	Illumina Single End PCR Primer 1 (96% over 33bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	1654	0.20490407045528594	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	1117	0.1383783837355226	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	1057	0.1309453461132027	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	990	0.12264512076827878	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	986	0.12214958492679077	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	983	0.12177793304567477	No Hit
GGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCT	936	0.11595538690819085	No Hit
CCCACGTCCAGAAACATCGATTACTTAAGCGTCTACGAGCGTAGCCTGCA	933	0.11558373502707485	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	913	0.11310605581963487	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTGTAGA	1870	65.692566	42
GGTGGTC	1875	65.33073	53
CTCTATG	1825	65.198845	36
GGTCGCC	1915	65.06268	56
CGGTGGT	1905	65.03677	52
GTCGCCG	1865	64.93844	57
GTAGATC	1745	64.782524	44
AGATCTC	1675	64.355644	46
GTGCCTC	1880	64.03604	32
AGTGTGC	1990	63.665806	29
TCGGTGG	1895	63.533092	51
GTGGTCG	1980	63.280308	54
TAGATCT	1785	62.742596	45
GTGTGCC	2025	62.73824	30
CCTCTAT	1875	62.71361	35
TGGTCGC	1990	62.4347	55
TCTATGT	1910	62.1218	37
TGTAGAT	2020	62.027233	43
CCGTATC	1845	61.855682	61
GTAGGGA	2105	61.351475	19