HLNTYAFXY_n02_surD_T3_R1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNTYAFXY_n02_surD_T3_R1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	753955
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	1445	0.19165600068969635	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	918	0.12175792984992473	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	908	0.12043159074480574	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATC	815	0.10809663706719896	Illumina Single End PCR Primer 1 (97% over 35bp)
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	796	0.10557659276747286	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	778	0.10318918237825865	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	777	0.10305654846774674	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GGTCGCC	230	0.0	54.77944	56
TCGGTGG	190	0.0	53.417965	51
CGGTGGT	205	0.0	52.92377	52
CTATAGT	200	0.0	50.747066	37
TGTAGGC	275	0.0	49.64008	31
GCTATAG	205	0.0	49.509335	36
ATAGTGT	225	0.0	48.216236	39
TAGTGTA	225	0.0	48.216236	40
GGTGGTC	255	0.0	46.66397	53
AGAGTGT	290	0.0	45.8655	27
GTAGGGA	310	0.0	45.15868	19
GTGTAGA	195	0.0	44.86325	42
GTGGTCG	300	0.0	41.997574	54
GTAGATC	205	0.0	40.970524	44
TGTACTC	315	0.0	40.013615	2
CTAGGTG	35	0.0012558509	39.99769	50
CGTGTAG	360	0.0	38.886642	16
CTCTAGT	325	0.0	38.772133	6
AAGAGTG	355	0.0	38.453583	26
TATAGTG	275	0.0	38.17708	38