HLNTYAFXY_n02_PY79_T3_R3.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNTYAFXY_n02_PY79_T3_R3.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	854364
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
TTTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAG	1893	0.22156832450805514	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTGATAGTCCTACAGA	1494	0.1748669185499389	No Hit
TTGTACTCTAGTTGTTACCTCTAATGCTGGACACCTACTATCTAACCTCT	1358	0.1589486448399043	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	1174	0.13741215687926925	No Hit
TTTTTCCACCTTAGAGTACAAACGGAACACGAGAATTTTTACCCTACAGA	993	0.11622680730929674	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGATAGGGTGTAGATC	941	0.11014040853781293	Illumina Single End PCR Primer 1 (97% over 35bp)
GCGAGGTTTCTTATAAGCTTTTTTCATTGAGCATCCCTCCTAAAATAGAG	896	0.10487333267787499	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
ATAGGGT	215	55.350826	37
CGGTGGT	265	54.14972	52
GATAGGG	235	50.63123	36
CTCTAGT	460	50.216255	6
GGTGGTC	280	50.001797	53
GTGGTCG	305	49.346035	54
TCGGTGG	285	49.121696	51
GTAGGAT	315	47.776695	32
GTGTAGA	280	47.498928	42
ACTCTAG	495	46.668343	5
GGTCGCC	340	46.325195	56
TAGGATA	320	45.933773	33
AGAGTGT	315	45.554523	27
GTAGATC	250	43.39902	44
TCTAGTT	545	43.02151	7
GTCGTGT	425	42.820057	14
TGTACTC	560	41.27081	2
TAGGGTG	285	40.5254	38
AGATCTC	260	40.383705	46
GTAGGGA	365	40.270702	19