HLNTYAFXY_n02_PY79_T3_R2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNTYAFXY_n02_PY79_T3_R2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	598129
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATC	7301	1.2206396947815605	Illumina Single End PCR Primer 1 (96% over 33bp)
ATTTTTTTACAAGGAAGGAGGGAAAAGGATGAAAAAGGCTTATAAGAAAC	868	0.14511919669502732	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	801	0.1339175997151116	No Hit
CGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAAT	750	0.12539101096920566	No Hit
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	739	0.12355194280832396	No Hit
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTGCCTCTATGTGTAGATA	733	0.12254881472057032	Illumina Single End PCR Primer 1 (96% over 33bp)
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	725	0.12121131060356545	No Hit
GGCGTGATAGCCTCAAACGTTAATCGTTTTGGATAAGATTAATGACCGCC	665	0.111180029726029	No Hit
GCGAGGTTTCTTATAAGCTTTTTTCATTGAGCATCCCTCCTAAAATAGAG	649	0.10850502149201927	No Hit
GTTTCTTATAAGCTTTTTTCATTGAGCATCCCTCCTAAAATAGAGTACTA	639	0.10683314134576322	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	637	0.10649876531651199	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	627	0.10482688517025592	No Hit
GAAAAAGGCTTATAAGAAACCTCGTCTTTTTGAACTGCGCCGTGCTGTAG	609	0.10181750090699497	No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	606	0.10131593686311816	No Hit
GGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCT	605	0.10114874884849254	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GGTGGTC	1295	67.305336	53
CGGTGGT	1240	66.90316	52
GGTCGCC	1365	66.41819	56
TCGGTGG	1220	66.278404	51
GTGGTCG	1350	66.11901	54
CTAGGTG	85	65.89022	50
GTGTAGA	1140	65.698616	42
GCCTCTA	1285	64.81639	34
CCTCTAT	1350	64.806305	35
GTGCCTC	1315	63.60381	32
GTAGATC	1110	63.37535	44
GTGTGCC	1365	63.325012	30
TGTAGAT	1265	62.80332	43
GTCGCCG	1400	62.7575	57
CCCTATC	140	62.50747	61
CTCTATG	1245	62.40144	36
TCGCCGT	1425	61.902134	58
AGTGTGC	1400	61.74189	29
AGATCTC	1085	61.620262	46
TAGATCT	1165	61.595345	45