HLNTYAFXY_n02_PY79_T3_R1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNTYAFXY_n02_PY79_T3_R1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	617616
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCGTCGTGTAGGGAAAGAGTGTAGGCTATAGTGTAGATC	894	0.14475013600683923	Illumina Single End PCR Primer 1 (97% over 35bp)
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	717	0.11609155203233076	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	703	0.11382477137897981	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	684	0.11074842620657496	No Hit
GCGAGGTTTCTTATAAGCTTTTTTCATTGAGCATCCCTCCTAAAATAGAG	658	0.10653869070749461	No Hit
ATTTTTTTACAAGGAAGGAGGGAAAAGGATGAAAAAGGCTTATAAGAAAC	649	0.1050814745731976	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	638	0.10330043263127899	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	635	0.10281469391984664	No Hit
GTGGAGACGGTGGGAGTCGAACCCACGTCCAGAAACATCGATTACTTAAG	619	0.10022408745887412	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATAGT	180	0.0	60.269623	37
CGGTGGT	215	0.0	60.224407	52
GGTGGTC	230	0.0	54.775196	53
ATAGTGT	180	0.0	54.43708	39
GCTATAG	195	0.0	53.843227	36
TCGGTGG	215	0.0	53.71366	51
GGTCGCC	255	0.0	50.777443	56
TAGTGTA	195	0.0	50.24961	40
AGAGTGT	300	0.0	49.01321	27
CCCTATC	50	6.2018444E-8	48.99337	61
GTCGCCC	60	4.940375E-9	46.66035	57
CGCCCTA	60	4.940375E-9	46.66035	59
GTGGTCG	280	0.0	46.243744	54
CGTGTAG	380	0.0	46.05386	16
GTAGGGA	365	0.0	46.02862	19
GTCGCCG	265	0.0	44.899586	57
TGTAGGC	345	0.0	44.6461	31
GGCTATA	330	0.0	43.486004	35
GAGTGTA	345	0.0	42.616734	28
TCGTGTA	470	0.0	42.44794	15