HLNTYAFXY_n01_surE_T2_R2.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNTYAFXY_n01_surE_T2_R2.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	788581
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTA	9638	1.2221953103105452	TruSeq Adapter, Index 2 (97% over 37bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGCTCATTATCTCGTAT	3433	0.43533891889355697	TruSeq Adapter, Index 2 (97% over 37bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GTATGCC	1670	47.993446	48
TCGTATG	1750	45.79946	46
AGTCACC	1825	45.25974	29
ACTACCC	155	45.163624	6
TATCTCG	1625	44.799473	42
ACCGCTC	1845	44.579422	33
CACCGCT	1840	44.51035	32
CGTATGC	1835	43.868694	47
CGCTCAT	1870	43.796276	35
GTTACTA	160	43.75226	3
CAGTCAC	1910	43.06232	28
ACTCCAG	1920	43.02033	24
CCAGTCA	1920	42.83804	27
AGATCGG	1965	42.404804	1
CTCGTAT	1745	42.32042	45
CTCATTA	1950	41.999508	37
ATTATCT	1790	41.843082	40
CTCCAGT	1985	41.78792	25
CCGCTCA	1975	41.645077	34
GCCGTCT	1810	41.574097	52