HLNTYAFXY_n01_PY79_T3_R1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNTYAFXY_n01_PY79_T3_R1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	617616
Sequences flagged as poor quality	0
Sequence length	76
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTA	2174	0.3519986528846403	TruSeq Adapter, Index 7 (97% over 38bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGAGATTCCATCTCGTAT	818	0.13244475531721975	TruSeq Adapter, Index 7 (97% over 38bp)
CGATTACTTAAGCGTCTACGAGCGTAGCCTGCATATTTATGGTTTCACTC	767	0.12418719722286986	No Hit
TCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCACTTAAA	695	0.11252946814849356	No Hit
GATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACACGCA	679	0.10993886168752104	No Hit
ACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGAT	656	0.10621486489987306	No Hit
CAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGATCTCGTAAACA	653	0.10572912618844071	No Hit
TACGGATTCGACAGGGATGGATCGAGCTTGAGCTGCGAGCCGAGAGGCGA	646	0.10459573586176524	No Hit
ATTTTTTTACAAGGAAGGAGGGAAAAGGATGAAAAAGGCTTATAAGAAAC	642	0.1039480842465221	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
AGTCACG	495	38.184246	29
GTCACGA	560	35.002228	30
ACTCCAG	560	34.3744	24
CAGTCAC	555	34.05622	28
TCACGAG	555	33.425552	31
GTATGCC	540	33.05766	48
CCAGTCA	600	32.085373	27
CTCCAGT	600	32.082775	25
GTGGAGA	220	31.820206	1
CGAGATT	575	31.651625	34
CGTATGC	600	29.749483	47
TCTGAAC	685	29.634521	19
AGATCGG	650	29.617268	1
TCGTATG	605	29.503622	46
GCCGTCT	580	28.96736	52
GCACACG	645	28.759192	12
CACGAGA	650	28.540276	32
ACGTCTG	675	28.518023	16
CACACGT	655	28.32012	13
TCCAGTC	685	28.1017	26