HLNTYAFXY_n01_4_ctrl.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNTYAFXY_n01_4_ctrl.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	25963222
Sequences flagged as poor quality	0
Sequence length	76
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTTTAAGAAGAAAGTTTTGTAAGAGTTTTCGTCTTGAAAGTTTGTTAAGA	127615	0.4915222001337123	No Hit
CCGCGGTTTCCTTCAACGATTTCAAAAGAAACAGCTTGGCCTTCTTCTAA	52242	0.2012153961476738	No Hit
TTTAAGAAGAAAGTTTTGTAAGAGTTTTCGTCTTGAAAGTTTGTTAAGAG	45910	0.1768270517426535	No Hit
CTCAACTTTACCGGATTTCAAAGCTCGAGCAGATACATATACTTTTTTAG	42760	0.16469450517351045	No Hit
TGAAGATTGACTTTTCGTCTTGATGATACTTTGGGCAAGGATAGTATATA	38168	0.14700794839715967	No Hit
GAAGATTTAACCTTAAGACACTGTGCTACAGGTTGTATCTTAGGAGGTGA	37055	0.14272111527606243	No Hit
ATTTTTTGTTAAAGCGATCAACACGACCATCAGCAGAAGCGAATTTTTGA	35788	0.1378411354338071	No Hit
CTAACGTTCTGTAAGCCATGTTTTGTTCCATCGTACTGCAAACGGCTCAT	31542	0.12148723297901932	No Hit
ATTTAACCTTAAGACACTGTGCTACAGGTTGTATCTTAGGAGGTGAAACA	27455	0.10574573525581686	No Hit
CTCGATTACAATACCCATACTGCGGGCAGTACCTTCAACCATGCGCATTG	26525	0.10216374531635557	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
GAACTCC	11890	34.735207	21
ACTCCGC	12660	32.373806	32
GGGTGGC	9105	30.406137	66
CAGTCAC	13650	30.333624	27
GGTGGCA	9390	29.483265	67
TGGGTGG	9720	28.373995	65
CACTCCG	14630	28.32563	31
GTCACTC	14575	28.31245	29
CCAGTCA	14770	28.079922	26
CACGTCT	15310	27.340818	14
ACACGTC	15580	27.136572	13
TCCAGTC	16140	25.783173	25
AGTCACT	16425	25.720186	28
CTCCAGT	16075	25.692167	24
AGCACAC	16710	25.385263	10
CACACGT	16975	25.09206	12
TAAGAGT	37540	24.902866	20
TCACTCC	16625	24.821291	30
CTCCGCG	16795	24.674152	33
TGAACTC	16885	24.666958	20