HLNNLBGX5_n01_ir108_4bs-25_1.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLNNLBGX5_n01_ir108_4bs-25_1.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	11945375
Sequences flagged as poor quality	0
Sequence length	75
%GC	54

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GCGGAAGCGAGAATGTCGGCTTGAGTAACGAAAACATTGGTGAGAATCCAATGCCCCGAAAACCCAAGGTTTCCT	15765	0.13197576467879826	No Hit
GCCAGTAGTCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGCAAGTATGAACTAATTCGAACTGTGAAACTG	15369	0.1286606741102728	No Hit
CTGACATGCGTGCGAGTCGACGGGTTCTGAAACCTGGGATGCGCAAGGAAGCTGACGAGCGGGAGGCCCTCACGG	14962	0.12525349769262162	No Hit
GCGATTTGTCTGGTTAATTCCGTTAACGAACGAGACCTCAGCCTGCTAACTAGCTATGCGGAGCCATCCCTCCGC	13724	0.1148896539455647	No Hit
CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT	13326	0.11155782049538002	No Hit
GCGGTGGATACCTAGGTACCCAGAGACGAGGAAGGGCGTAGCAAGCGACGAAATGCTTCGGGGAGTTGAAAATAA	12580	0.1053127256364911	No Hit
CACGCTTTCACGGTTCGTATTCGTACTGGAAATCAGAATCAAACGAGCTTTTACCCTTTTGTTCCACACGAGATT	12299	0.10296035076337076	No Hit

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CTCGTAT	810	37.066353	44
GCCAGTA	3570	34.218334	1
TCGTATG	895	33.93153	45
TATGCCG	945	31.405712	48
CTGACAT	4505	29.567614	1
CATGCGT	4490	28.728	5
TTCGATC	2465	28.263826	2
ACATGCG	4570	28.225103	4
ATGCGTG	4600	28.041027	6
GGTGGAT	3590	27.283863	3
TGCGTGC	4845	26.551874	7
GATCCTG	3000	25.06198	5
GTGCGAG	5130	24.875082	10
GTGGATA	4000	24.487164	4
TGCGAGT	5295	24.360477	11
GGCTCAG	2820	24.215654	11
ATGCCGT	1275	23.816307	49
GGCAACG	1960	23.756046	2
TAGTCAT	5300	23.491537	6
CGTGAAC	1930	23.240442	64