FastQCFastQC Report
Thu 14 Jan 2021
HLNCFAFX2_n01_lib.v2_msh3_MA_strain_A14.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLNCFAFX2_n01_lib.v2_msh3_MA_strain_A14.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3230003
Sequences flagged as poor quality0
Sequence length151
%GC37

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TATATATACAGGCAACACGCAGATATAGGTGCGACGTGAACAGTGAGCTG74460.23052610167854332No Hit
GTATATATATATACATGAGAAGAACGGCATAGTGCGTGTTTATGCTTAAA40140.12427233039721634No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)