[2021-01-15 05:21:20,661] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2021-01-15 05:21:20,661] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2021-01-15 05:21:20,661] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2021-01-15 05:21:20,662] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2021-01-15 05:21:20,662] multiqc [DEBUG ] New config 'report_section_order': {'demux_report': {'after': 'run_stats'}} [2021-01-15 05:21:20,662] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HLMNMAFX2/merged [2021-01-15 05:21:21,952] multiqc [DEBUG ] Latest MultiQC version is v1.9 [2021-01-15 05:21:21,952] multiqc [INFO ] This is MultiQC v1.9 [2021-01-15 05:21:21,952] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HLMNMAFX2/merged [2021-01-15 05:21:21,952] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HLMNMAFX2/merged [2021-01-15 05:21:21,952] multiqc [INFO ] Template : default [2021-01-15 05:21:21,952] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2021-01-15 05:21:21,952] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HLMNMAFX2/merged [2021-01-15 05:21:21,952] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2021-01-15 05:21:21,952] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-1143494/tmpgfmkpv2u [2021-01-15 05:21:22,044] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-9_fastqc.html [2021-01-15 05:21:22,046] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-9_fastqc.html [2021-01-15 05:21:22,095] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-3_fastqc.html [2021-01-15 05:21:22,096] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-3_fastqc.html [2021-01-15 05:21:22,140] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-12_fastqc.html [2021-01-15 05:21:22,142] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-12_fastqc.html [2021-01-15 05:21:22,181] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-12_fastqc.html [2021-01-15 05:21:22,183] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-12_fastqc.html [2021-01-15 05:21:22,225] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-13_fastqc.html [2021-01-15 05:21:22,227] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-13_fastqc.html [2021-01-15 05:21:22,268] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_undetermined_fastqc.html [2021-01-15 05:21:22,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_undetermined_fastqc.html [2021-01-15 05:21:22,309] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-16_fastqc.html [2021-01-15 05:21:22,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-16_fastqc.html [2021-01-15 05:21:22,351] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-01-15 05:21:22,352] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: undetermined_barcodes.txt [2021-01-15 05:21:22,924] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-17_fastqc.html [2021-01-15 05:21:22,926] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-17_fastqc.html [2021-01-15 05:21:22,967] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-7_fastqc.html [2021-01-15 05:21:22,969] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-7_fastqc.html [2021-01-15 05:21:23,012] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-14_fastqc.html [2021-01-15 05:21:23,014] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-14_fastqc.html [2021-01-15 05:21:23,053] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-6_fastqc.html [2021-01-15 05:21:23,055] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-6_fastqc.html [2021-01-15 05:21:23,098] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-11_fastqc.html [2021-01-15 05:21:23,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-11_fastqc.html [2021-01-15 05:21:23,142] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-8_fastqc.html [2021-01-15 05:21:23,144] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-8_fastqc.html [2021-01-15 05:21:23,189] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-5_fastqc.html [2021-01-15 05:21:23,191] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-5_fastqc.html [2021-01-15 05:21:23,234] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-17_fastqc.html [2021-01-15 05:21:23,235] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-17_fastqc.html [2021-01-15 05:21:23,277] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-16_fastqc.html [2021-01-15 05:21:23,279] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-16_fastqc.html [2021-01-15 05:21:23,320] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-9_fastqc.html [2021-01-15 05:21:23,322] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-9_fastqc.html [2021-01-15 05:21:23,367] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-19_fastqc.html [2021-01-15 05:21:23,369] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-19_fastqc.html [2021-01-15 05:21:23,409] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-11_fastqc.html [2021-01-15 05:21:23,411] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-11_fastqc.html [2021-01-15 05:21:23,453] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-4_fastqc.html [2021-01-15 05:21:23,455] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-4_fastqc.html [2021-01-15 05:21:23,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-19_fastqc.html [2021-01-15 05:21:23,498] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-19_fastqc.html [2021-01-15 05:21:23,537] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-6_fastqc.html [2021-01-15 05:21:23,539] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-6_fastqc.html [2021-01-15 05:21:23,583] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-5_fastqc.html [2021-01-15 05:21:23,585] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-5_fastqc.html [2021-01-15 05:21:23,627] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-10_fastqc.html [2021-01-15 05:21:23,628] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-10_fastqc.html [2021-01-15 05:21:23,669] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-1_fastqc.html [2021-01-15 05:21:23,670] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-1_fastqc.html [2021-01-15 05:21:23,714] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-15_fastqc.html [2021-01-15 05:21:23,716] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-15_fastqc.html [2021-01-15 05:21:23,758] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-20_fastqc.html [2021-01-15 05:21:23,760] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-20_fastqc.html [2021-01-15 05:21:23,802] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-8_fastqc.html [2021-01-15 05:21:23,804] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-8_fastqc.html [2021-01-15 05:21:23,850] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-2_fastqc.html [2021-01-15 05:21:23,852] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-2_fastqc.html [2021-01-15 05:21:23,894] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-13_fastqc.html [2021-01-15 05:21:23,895] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-13_fastqc.html [2021-01-15 05:21:23,939] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-1_fastqc.html [2021-01-15 05:21:23,940] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-1_fastqc.html [2021-01-15 05:21:23,984] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-14_fastqc.html [2021-01-15 05:21:23,985] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-14_fastqc.html [2021-01-15 05:21:24,025] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-15_fastqc.html [2021-01-15 05:21:24,027] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-15_fastqc.html [2021-01-15 05:21:24,069] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-2_fastqc.html [2021-01-15 05:21:24,071] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-2_fastqc.html [2021-01-15 05:21:24,113] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-3_fastqc.html [2021-01-15 05:21:24,115] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-3_fastqc.html [2021-01-15 05:21:24,159] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-18_fastqc.html [2021-01-15 05:21:24,161] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-18_fastqc.html [2021-01-15 05:21:24,201] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-4_fastqc.html [2021-01-15 05:21:24,203] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-4_fastqc.html [2021-01-15 05:21:24,245] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-18_fastqc.html [2021-01-15 05:21:24,247] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-18_fastqc.html [2021-01-15 05:21:24,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-10_fastqc.html [2021-01-15 05:21:24,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-10_fastqc.html [2021-01-15 05:21:24,330] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-7_fastqc.html [2021-01-15 05:21:24,331] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n01_vk12-7_fastqc.html [2021-01-15 05:21:24,373] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_undetermined_fastqc.html [2021-01-15 05:21:24,375] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_undetermined_fastqc.html [2021-01-15 05:21:24,414] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-20_fastqc.html [2021-01-15 05:21:24,416] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HLMNMAFX2_n02_vk12-20_fastqc.html [2021-01-15 05:21:24,693] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2021-01-15 05:21:24,693] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2021-01-15 05:21:24,700] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2021-01-15 05:21:24,710] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2021-01-15 05:21:24,720] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 21 samples (table) [2021-01-15 05:21:24,723] multiqc [DEBUG ] No samples found: conpair [2021-01-15 05:21:24,725] multiqc [DEBUG ] No samples found: peddy [2021-01-15 05:21:24,728] multiqc [DEBUG ] No samples found: somalier [2021-01-15 05:21:24,731] multiqc [DEBUG ] No samples found: methylQA [2021-01-15 05:21:24,734] multiqc [DEBUG ] No samples found: mosdepth [2021-01-15 05:21:24,737] multiqc [DEBUG ] No samples found: phantompeakqualtools [2021-01-15 05:21:24,740] multiqc [DEBUG ] No samples found: qualimap [2021-01-15 05:21:24,742] multiqc [DEBUG ] No samples found: preseq [2021-01-15 05:21:24,745] multiqc [DEBUG ] No samples found: quast [2021-01-15 05:21:24,748] multiqc [DEBUG ] No samples found: qorts [2021-01-15 05:21:24,751] multiqc [DEBUG ] No samples found: rna_seqc [2021-01-15 05:21:24,753] multiqc [DEBUG ] No samples found: rockhopper [2021-01-15 05:21:24,756] multiqc [DEBUG ] No samples found: rsem [2021-01-15 05:21:24,761] multiqc [DEBUG ] No samples found: rseqc [2021-01-15 05:21:24,763] multiqc [DEBUG ] No samples found: busco [2021-01-15 05:21:24,766] multiqc [DEBUG ] No samples found: goleft_indexcov [2021-01-15 05:21:24,769] multiqc [DEBUG ] No samples found: disambiguate [2021-01-15 05:21:24,771] multiqc [DEBUG ] No samples found: supernova [2021-01-15 05:21:24,776] multiqc [DEBUG ] No samples found: deeptools [2021-01-15 05:21:24,779] multiqc [DEBUG ] No samples found: sargasso [2021-01-15 05:21:24,781] multiqc [DEBUG ] No samples found: verifybamid [2021-01-15 05:21:24,784] multiqc [DEBUG ] No samples found: mirtrace [2021-01-15 05:21:24,787] multiqc [DEBUG ] No samples found: happy [2021-01-15 05:21:24,790] multiqc [DEBUG ] No samples found: mirtop [2021-01-15 05:21:24,793] multiqc [DEBUG ] No samples found: homer [2021-01-15 05:21:24,795] multiqc [DEBUG ] No samples found: macs2 [2021-01-15 05:21:24,798] multiqc [DEBUG ] No samples found: theta2 [2021-01-15 05:21:24,801] multiqc [DEBUG ] No samples found: snpeff [2021-01-15 05:21:24,804] multiqc [DEBUG ] No samples found: gatk [2021-01-15 05:21:24,807] multiqc [DEBUG ] No samples found: htseq [2021-01-15 05:21:24,810] multiqc [DEBUG ] No samples found: bcftools [2021-01-15 05:21:24,812] multiqc [DEBUG ] No samples found: featureCounts [2021-01-15 05:21:24,815] multiqc [DEBUG ] No samples found: fgbio [2021-01-15 05:21:24,821] multiqc [DEBUG ] No samples found: dragen [2021-01-15 05:21:24,823] multiqc [DEBUG ] No samples found: dedup [2021-01-15 05:21:24,826] multiqc [DEBUG ] No samples found: damageprofiler [2021-01-15 05:21:24,833] multiqc [DEBUG ] No samples found: biobambam2 [2021-01-15 05:21:24,836] multiqc [DEBUG ] No samples found: mtnucratio [2021-01-15 05:21:24,838] multiqc [DEBUG ] No samples found: picard [2021-01-15 05:21:24,841] multiqc [DEBUG ] No samples found: prokka [2021-01-15 05:21:24,844] multiqc [DEBUG ] No samples found: samblaster [2021-01-15 05:21:24,847] multiqc [DEBUG ] No samples found: samtools [2021-01-15 05:21:24,850] multiqc [DEBUG ] No samples found: sexdeterrmine [2021-01-15 05:21:24,853] multiqc [DEBUG ] No samples found: bamtools [2021-01-15 05:21:24,856] multiqc [DEBUG ] No samples found: jellyfish [2021-01-15 05:21:24,859] multiqc [DEBUG ] No samples found: vcftools [2021-01-15 05:21:24,862] multiqc [DEBUG ] No samples found: longranger [2021-01-15 05:21:24,864] multiqc [DEBUG ] No samples found: stacks [2021-01-15 05:21:24,867] multiqc [DEBUG ] No samples found: varscan2 [2021-01-15 05:21:24,872] multiqc [DEBUG ] No samples found: bbmap [2021-01-15 05:21:24,875] multiqc [DEBUG ] No samples found: bismark [2021-01-15 05:21:24,878] multiqc [DEBUG ] No samples found: biscuit [2021-01-15 05:21:24,881] multiqc [DEBUG ] No samples found: hicexplorer [2021-01-15 05:21:24,883] multiqc [DEBUG ] No samples found: hicup [2021-01-15 05:21:24,886] multiqc [DEBUG ] No samples found: hicpro [2021-01-15 05:21:24,889] multiqc [DEBUG ] No samples found: salmon [2021-01-15 05:21:24,891] multiqc [DEBUG ] No samples found: kallisto [2021-01-15 05:21:24,894] multiqc [DEBUG ] No samples found: slamdunk [2021-01-15 05:21:24,897] multiqc [DEBUG ] No samples found: star [2021-01-15 05:21:24,899] multiqc [DEBUG ] No samples found: hisat2 [2021-01-15 05:21:24,902] multiqc [DEBUG ] No samples found: tophat [2021-01-15 05:21:24,905] multiqc [DEBUG ] No samples found: bowtie2 [2021-01-15 05:21:24,907] multiqc [DEBUG ] No samples found: bowtie1 [2021-01-15 05:21:24,910] multiqc [DEBUG ] No samples found: snpsplit [2021-01-15 05:21:24,913] multiqc [DEBUG ] No samples found: kat [2021-01-15 05:21:24,915] multiqc [DEBUG ] No samples found: leehom [2021-01-15 05:21:24,918] multiqc [DEBUG ] No samples found: adapterRemoval [2021-01-15 05:21:24,921] multiqc [DEBUG ] No samples found: clipandmerge [2021-01-15 05:21:24,924] multiqc [DEBUG ] No samples found: cutadapt [2021-01-15 05:21:24,926] multiqc [DEBUG ] No samples found: flexbar [2021-01-15 05:21:24,929] multiqc [DEBUG ] No samples found: kaiju [2021-01-15 05:21:24,932] multiqc [DEBUG ] No samples found: kraken [2021-01-15 05:21:24,934] multiqc [DEBUG ] No samples found: malt [2021-01-15 05:21:24,937] multiqc [DEBUG ] No samples found: trimmomatic [2021-01-15 05:21:24,940] multiqc [DEBUG ] No samples found: sickle [2021-01-15 05:21:24,942] multiqc [DEBUG ] No samples found: skewer [2021-01-15 05:21:24,945] multiqc [DEBUG ] No samples found: sortmerna [2021-01-15 05:21:24,948] multiqc [DEBUG ] No samples found: biobloomtools [2021-01-15 05:21:24,950] multiqc [DEBUG ] No samples found: fastq_screen [2021-01-15 05:21:24,953] multiqc [DEBUG ] No samples found: afterqc [2021-01-15 05:21:24,956] multiqc [DEBUG ] No samples found: fastp [2021-01-15 05:21:25,955] multiqc.modules.fastqc.fastqc [INFO ] Found 42 reports [2021-01-15 05:21:26,786] multiqc [DEBUG ] No samples found: pycoqc [2021-01-15 05:21:26,789] multiqc [DEBUG ] No samples found: minionqc [2021-01-15 05:21:26,792] multiqc [DEBUG ] No samples found: multivcfanalyzer [2021-01-15 05:21:26,795] multiqc [DEBUG ] No samples found: clusterflow [2021-01-15 05:21:26,797] multiqc [DEBUG ] No samples found: bcl2fastq [2021-01-15 05:21:26,800] multiqc [DEBUG ] No samples found: interop [2021-01-15 05:21:26,803] multiqc [DEBUG ] No samples found: ivar [2021-01-15 05:21:26,805] multiqc [DEBUG ] No samples found: flash [2021-01-15 05:21:26,808] multiqc [DEBUG ] No samples found: seqyclean [2021-01-15 05:21:26,808] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2021-01-15 05:21:26,808] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2021-01-15 05:21:26,808] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2021-01-15 05:21:26,808] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2021-01-15 05:21:26,858] multiqc [INFO ] Compressing plot data [2021-01-15 05:21:27,616] multiqc [INFO ] Report : multiqc_report.html [2021-01-15 05:21:27,616] multiqc [INFO ] Data : multiqc_data [2021-01-15 05:21:27,616] multiqc [DEBUG ] Moving data file from '/state/partition1/job-1143494/tmpgfmkpv2u/multiqc_data' to '/scratch/gencore/logs/html/HLMNMAFX2/merged/multiqc_data' [2021-01-15 05:21:27,710] multiqc [INFO ] MultiQC complete