HLMNCBGXY_n01_rpbdst.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLMNCBGXY_n01_rpbdst.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	20451448
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGC	2215791	10.834396664725157	TruSeq Adapter, Index 11 (100% over 50bp)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG	44368	0.21694307415298908	No Hit
AAAGAGTGTAGATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACAT	34943	0.17085831770933774	TruSeq Adapter, Index 11 (100% over 41bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGCTACATCTCGTATGCC	21249	0.1038997336521111	TruSeq Adapter, Index 11 (100% over 51bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
CGTATGC	240090	43.153233	45
CATCTCG	240465	42.59618	40
CTCGTAT	242920	42.456417	43
TCTCGTA	242670	42.329563	42
TCGTATG	244540	42.32032	44
ATCTCGT	242730	42.258953	41
ACATCTC	253740	40.378307	39
TACATCT	256425	39.968575	38
CTACATC	257095	39.846714	37
GCTACAT	264505	38.796677	36
GGCTACA	276385	37.265003	35
CGGCTAC	286840	35.96182	34
ACGGCTA	301195	34.34515	33
CACGGCT	304915	33.924335	32
TCACGGC	309060	33.475758	31
GTCACGG	315645	32.80876	30
AGTCACG	318915	32.516747	29
CAGTCAC	331390	31.391201	28
CCAGTCA	340525	30.578905	27
CGGGGGG	1425	30.472395	5