FastQCFastQC Report
Tue 9 Apr 2024
HLM3KBGXV_n02_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLM3KBGXV_n02_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences14649365
Sequences flagged as poor quality0
Sequence length36
%GC49

[FAIL]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2319361.5832495128628443No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1751491.1956081372810357No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN985530.6727458835246443No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)