FastQCFastQC Report
Thu 3 Nov 2022
HLJY3DRX2_n02_4C.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLJY3DRX2_n02_4C.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences4961849
Sequences flagged as poor quality0
Sequence length101
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG3304176.659150651299546No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG2166124.365550019760779No Hit
GTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA1672253.3702154176799817No Hit
GCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC1529033.081573018445342No Hit
GTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA1347752.7162253426091767No Hit
TTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCT542431.0932013449018703No Hit
GCTGTTTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC399570.8052844816519004No Hit
CTGTTTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG395170.7964168196170419No Hit
CNGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG388170.7823091754706764No Hit
TTTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATC353230.7118918774029601No Hit
GNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG257230.5184156148242318No Hit
TTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTC245990.49576276908063915No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT243860.49147001450467354No Hit
ACAGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA208600.42040779556169483No Hit
GNTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC206080.41532904366900325No Hit
GTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC203170.40946429445958554No Hit
GTTGCTGTTTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA190890.3847154558713899No Hit
GCTATCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC189520.3819543883741726No Hit
GTTCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA182680.36816920466543823No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT179810.36238507056542835No Hit
TTTTTCGGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCT179420.3615990732487022No Hit
TTTTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCAT166150.33485501070266344No Hit
GNTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA161350.32518119757372704No Hit
GACTTAGACGCCGTGAGGCCTGTCTCTTATACACATCTGACGCTGCCGAC141570.28531702597156827No Hit
GACTTAGACGCCGTGAGGCGGACTGTCTCTTATACACATCTGACGCTGCC139210.28056073451650787No Hit
TTTTTTGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCT127960.25788773499556317No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT123590.2490805342927606No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG122640.2471659254443253No Hit
TTTTTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCA122500.24688377256139796No Hit
TTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCG105130.21187666130105934No Hit
GACTTAGACGCCGTGAGGCGGCTGTCTCTTATACACATCTGACGCTGCCG104240.21008297511673574No Hit
GGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACT103040.20766452183450163No Hit
GGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACT95300.19206549816409166No Hit
TTTTTTCGGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATC93810.18906258533865097No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG92420.18626121028672982No Hit
TGCTATCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAG92300.18601936495850638No Hit
TTTTCGGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTC90680.18275445302749035No Hit
GACTTAGACGCCGTGAGGCGGAGACTGTCTCTTATACACATCTGACGCTG89630.18063830640553552No Hit
TTTTTGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTC86050.17342325411353712No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG83990.16927157597903525No Hit
TGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAG82810.16689343025150502No Hit
GTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA81840.1649385138483658No Hit
CGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAAC80230.1616937556947017No Hit
CGGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAAC78060.15732038600932838No Hit
TTTTTTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATC76250.15367255230862528No Hit
GTTGCTGTCTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA75080.151314560358447No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG74590.15032702526820144No Hit
AGACTTAGACGCCGTGAGGCCTGTCTCTTATACACATCTGACGCTGCCGA73460.14804964842743099No Hit
GCTGTCTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG70870.14282982009327572No Hit
CTGCTCGGAGATGTGTATAAGAGACAGCTGTCTCTTATACACATCTGACG69910.14089505746748843No Hit
GTTGCTGTCTTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA68180.13740845398560092No Hit
CATCTGACGCTGCCGACGATCATCTCGAACTAAGCGTGTAGATCTCGGTG67370.1357759980200929No Hit
CTGTCTTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG66400.13382108161695366No Hit
GTATAAGAGACAGCTGTCTCTTATACACATCTGACGCTGCCGACGATCAT64790.1305763234632896No Hit
TTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA64650.13029417058036227No Hit
TTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG62850.12666649065701113No Hit
CTTAGACGCCGTGAGGCCTGTCTCTTATACACATCTGACGCTGCCGACGA61350.12364342405421849No Hit
GCTGTCTTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC58880.11866544104828664No Hit
GTGTATAAGAGACAGCTGTCTCTTATACACATCTGACGCTGCCGACGATC57470.11582375844166157No Hit
GTTGCTGTCTCTTATAACATCTGACGCTGCCGACGATCATCTCGAACTAA57430.11574314333225376No Hit
GATCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCG53850.10852809104025536No Hit
CACGAGACTTAGACGCCGTGAGGCCTGTCTCTTATACACATCTGACGCTG53250.1073188643991383No Hit
GTGCCACATCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATC53080.10697625018415513No Hit
GTTGCTGTCTCTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA51970.10473918089808859No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT50820.10242149650261424No Hit
TTTTATCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATC50400.1015750378538323No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTT50240.1012525774162011No Hit
GAGAAGCATCGTGTCAAAGCACCGACTCGGTGCCACATCGGTTGCTGTCT49620.10000304322038014No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)