FastQCFastQC Report
Thu 3 Nov 2022
HLJY3DRX2_n02_2C.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLJY3DRX2_n02_2C.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1775720
Sequences flagged as poor quality0
Sequence length101
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[WARN]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG1067106.00939337282905No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG860444.84558376320591No Hit
GCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC511012.8777622598157366No Hit
GTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA494682.785799562994166No Hit
GTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA454432.5591309440677583No Hit
CNGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG127070.7155970535895299No Hit
TTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCT124400.7005608992408713No Hit
GCTGTTTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC118080.6649697024305633No Hit
CTGTTTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG110840.6241975086162233No Hit
GNGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG103190.5811163922239992No Hit
TTTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATC81950.461502939652648No Hit
GTTCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA75820.4269817313540423No Hit
GTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC72040.4056945914896493No Hit
GNTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC68270.38446376681008265No Hit
GCTATCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC63060.35512355551550917No Hit
TTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTC61410.34583155001914717No Hit
GNTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA58170.3275854301353817No Hit
GTTGCTGTTTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA56890.32037708647759783No Hit
ACAGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA56350.31733606649697027No Hit
GNTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA52860.29768206699254385No Hit
TTTTTCGGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCT40840.22999121483116705No Hit
CGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAAC39840.22435969634852343No Hit
TTTTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCAT36270.20425517536548557No Hit
GGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACT34840.19620210393530513No Hit
CATCTGACGCTGCCGACGATCATCTCGAACTAAGCGTGTAGATCTCGGTG34780.1958642128263465No Hit
TGCTATCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAG31030.17474601851643276No Hit
TGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAG30360.17097290113306152No Hit
GTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA29850.16810082670691326No Hit
TTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCG29370.1653976978352443No Hit
TTTTTTGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCT26880.15137521681346158No Hit
GACTTAGACGCCGTGAGGCCTGTCTCTTATACACATCTGACGCTGCCGAC26670.15019259793210643No Hit
GACTTAGACGCCGTGAGGCGGACTGTCTCTTATACACATCTGACGCTGCC24280.13673326875858804No Hit
CTGCTCGGAGATGTGTATAAGAGACAGCTGTCTCTTATACACATCTGACG24200.13628274727997658No Hit
GGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACT23590.13284752100556393No Hit
TTTTTTTTCGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCA23300.13121438064559726No Hit
TTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA23290.13115806546077086No Hit
GTTGCTGTCTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAA23260.13098911990629153No Hit
TTTTCGGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTC22550.12699074178361452No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT22220.12513234068434212No Hit
GCTGTCTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG21860.1231049940305904No Hit
TTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG21360.12028923478926856No Hit
CTGTCTTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGCG21080.11871240961412836No Hit
TTTTTTCGGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATC20670.11640348703624444No Hit
CGGTTGTTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAAC20550.11572770481832723No Hit
TTTTTGGTTGCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTC19290.10863199153019619No Hit
GTTGCTGTCTTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTA18810.10592886265852725No Hit
GCTGTCTTTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC18110.10198679972067669No Hit
TCTGTCTCTTATACACATCTGACGCTGCCGACGATCATCTCGAACTAAGC18020.10147996305723875No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)