FastQCFastQC Report
Thu 3 Nov 2022
HLJY3DRX2_n01_3A.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLJY3DRX2_n01_3A.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23231942
Sequences flagged as poor quality0
Sequence length101
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTCCGAGCCCCTGTCTCTTATACACATCTCCGA2695751.1603636062796645No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTAT361540.15562194499280343No Hit
AGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGGCCGGA317140.13651032703163601No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTAC316240.136122929370261No Hit
GGAATGGGGTGGGTTTTGTATGTTCAAACTGTCATTTTATTTTTACGTTG250840.10797203264367654No Hit
CTATCTGAGGGGGGTCATCCATGGGGACGAGAAGGGATTTGACTGTAATG235930.10155414472023044No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)