FastQCFastQC Report
Thu 3 Nov 2022
HLJY3DRX2_n01_1A.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLJY3DRX2_n01_1A.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32452318
Sequences flagged as poor quality0
Sequence length101
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTCTCTTATACACATCTCCGAGCCCCTGTCTCTTATACACATCTCCGA4450661.3714459472509792No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGCGTCAATCTCGTA803160.2474892548507629No Hit
AGTATGAGGAGCGTTATGGAGTGGAAGTGAAATCACATGGCTAGGCCGGA453560.1397619732433289No Hit
GTTCTTGGGTGGGTGTGGGTATAATACTAAGTTGAGATGATATCATTTAC429020.13220010971173152No Hit
GTAATGATGTCGGGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTAT410600.12652408989706065No Hit
CTGTCTCTTATACACATCTCCGAGCCCACGAGACAGGCGTCAATCGCGTA382700.1179268611875429No Hit
CCCCATTCCTCCCCACACTCATCGCCCTTACCACGCTACTCCTACCTATC330350.10179550194226496No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)