FastQCFastQC Report
Wed 30 Nov 2022
HLJKYDRX2_n01_DO41.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLJKYDRX2_n01_DO41.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences18072068
Sequences flagged as poor quality0
Sequence length151
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGTCCGCACATCTCGTAT1013360.5607327285399767TruSeq Adapter, Index 18 (97% over 40bp)
TGTGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG195820.10835505931031247No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)