FastQCFastQC Report
Thu 28 Apr 2022
HLHJYAFX3_n01_11837_Input.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLHJYAFX3_n01_11837_Input.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences13248794
Sequences flagged as poor quality0
Sequence length151
%GC40

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATGGCGTATGC207840.15687465591207775TruSeq Adapter, Index 5 (97% over 41bp)
GATCGGAAGAGCACACGTCTGAACTCCAGTCACACAGTGATGTCGTATGC202090.15253463824707367TruSeq Adapter, Index 5 (98% over 50bp)

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)