FastQCFastQC Report
Fri 28 Oct 2022
HLGK3BGXM_n02_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLGK3BGXM_n02_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122922107
Sequences flagged as poor quality0
Sequence length36
%GC35

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14550491.183716286282011No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN6099260.4961890215565537No Hit
CGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGAC4881700.3971376767890905No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT3237030.26333993770542835No Hit
CGTGTTTGAGCGCGCTGCATACTTGGATCGTCGGAC1794230.14596479378603558No Hit
CGTTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA1711010.1391946527568064No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1652960.13447214991197637No Hit
CGCTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA1549580.12606194587927133No Hit
CCATGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT1314530.10694008035511465No Hit
CCGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA1312030.1067366995263106No Hit
TGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGAC1296210.10544970564163857No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)