FastQCFastQC Report
Thu 20 Oct 2022
HLGK3BGXM_n02_dmd-3_22.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLGK3BGXM_n02_dmd-3_22.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences32015712
Sequences flagged as poor quality0
Sequence length36
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGAC4358611.3613971789851183No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG1614230.5041993131372496No Hit
CGTGTTTGAGCGCGCTGCATACTTGGATCGTCGGAC1589930.4966092898386892No Hit
CGTTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA1469620.45903086584487013No Hit
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN1413290.44143637973754885No Hit
CGCTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA1338070.41794166564216967No Hit
TGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGAC1152810.3600763275231861No Hit
CCGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA1134070.35422295153079836No Hit
CGTGCATGAGCGCGCTGCATACTTGGATCGTCGGAC939020.2932997398277446No Hit
CGCGCTTGAGCGCGCTGCATACTTGGATCGTCGGAC858090.2680215264305226No Hit
CTGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA804980.25143279649692No Hit
CGTGGCTTGAGCGCGCTGCATACTTGGATCGTCGGA680550.2125675043553615No Hit
TCGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA647700.20230691730360392No Hit
CGTCGCTTGAGCGCGCTGCATACTTGGATCGTCGGA600040.1874204765460159No Hit
ACGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA553160.17277766616591253No Hit
GCGCGCTGCATACTTGGATCGTCGGACTGTAGAACT551660.17230914620921128No Hit
CGATGCTTGAGCGCGCTGCATACTTGGATCGTCGGA500000.15617331890041988No Hit
CAGTGCTTGAGCGCGCTGCATACTTGGATCGTCGGA484860.1514443908041152No Hit
TGTGTTTGAGCGCGCTGCATACTTGGATCGTCGGAC408420.12756861381061899No Hit
CGTGCCTGAGCGCGCTGCATACTTGGATCGTCGGAC370460.1157119354396991No Hit
CGTGATTGAGCGCGCTGCATACTTGGATCGTCGGAC364640.11389407800769821No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT352050.10996163383778565No Hit
GCAGTGTCGTATGTCCGAAGTCCTTACGATTGAGGC349510.1091682733777715No Hit
CGTAGCTTGAGCGCGCTGCATACTTGGATCGTCGGA348930.10898711232784702No Hit
CGTGTCTTGAGCGCGCTGCATACTTGGATCGTCGGA324490.1013533604999945No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)