FastQCFastQC Report
Fri 28 Oct 2022
HLGK3BGXM_n01_undetermined.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLGK3BGXM_n01_undetermined.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences122922107
Sequences flagged as poor quality0
Sequence length15
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAA105493148.582112898536632No Hit
CAAAAAAAAAAAAAA69226945.631772973107271No Hit
CAAGTATGCAGCGCG48076163.911107706606429No Hit
CCAAAAAAAAAAAAA16936751.3778441008987912No Hit
TAAAAAAAAAAAAAA13051351.0617577520046904No Hit
ACAAAAAAAAAAAAA7658590.6230441526681608No Hit
GAAAAAAAAAAAAAA5475250.4454243531637478No Hit
CCCAAAAAAAAAAAA3893970.31678353837524115No Hit
ACCAAAAAAAAAAAA3879930.31564135164067764No Hit
TCAAAAAAAAAAAAA3465070.2818915233856185No Hit
AAGTATGCAGCGCGC3087110.25114359616370713No Hit
CTAAAAAAAAAAAAA2991270.24334678871067514No Hit
TCCAAAAAAAAAAAA2376200.19330941016167255No Hit
GCAAAAAAAAAAAAA2213950.18010999437228975No Hit
CGAAAAAAAAAAAAA1856720.1510485009828216No Hit
ATAAAAAAAAAAAAA1611780.13112206089991607No Hit
GCCAAAAAAAAAAAA1484180.12074150339775741No Hit
CCAAGTATGCAGCGC1315930.10705397361924492No Hit
AACAAAAAAAAAAAA1257730.10231926792468665No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)