FastQCFastQC Report
Thu 20 Oct 2022
HLGK3BGXM_n01_dmd-3_28.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLGK3BGXM_n01_dmd-3_28.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences48877642
Sequences flagged as poor quality0
Sequence length15
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAAAAAAAAAAAA2316830.4740060905556778No Hit
TGGAATTCTCGGGTG1898590.3884373145496667Illumina Small RNA Adapter 2 (100% over 15bp)
AAAAAAAAAAAAAAA1781920.3645675051181888No Hit
CCAAAAAAAAAAAAA966090.1976547886659508No Hit
CAAGTATGCAGCGCG776910.1589499755327804No Hit
GCTGGAATTCTCGGG754020.1542668527258332No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)