FastQCFastQC Report
Thu 20 Oct 2022
HLGK3BGXM_n01_WT_22_26.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLGK3BGXM_n01_WT_22_26.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences40777
Sequences flagged as poor quality0
Sequence length15
%GC37

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAAAAAAAAAAAAAA17064.183731024842436No Hit
CAAAAAAAAAAAAAA12983.183166981386566No Hit
TGCAACTCCAGTCTT5911.4493464453000466No Hit
CCAAAAAAAAAAAAA4441.0888491061137406No Hit
TAAAAAAAAAAAAAA2170.5321627387988327No Hit
GAAAAAAAAAAAAAA1410.3457831620766608No Hit
ACAAAAAAAAAAAAA1180.28937881648968783No Hit
CCCAAAAAAAAAAAA1080.26485518797361257No Hit
CAAGTATGCAGCGCG880.21580793094146208No Hit
CTAAAAAAAAAAAAA750.1839272138705643No Hit
TCAAAAAAAAAAAAA560.13733231969002135No Hit
ACCAAAAAAAAAAAA550.1348799568384138No Hit
ATAAAAAAAAAAAAA470.11526105402555362No Hit
GCAACTCCAGTCTTT440.10790396547073104No Hit
GCAAAAAAAAAAAAA430.10545160261912354No Hit
ATCAAAAAAAAAAAA420.10299923976751599No Hit
TCCAAAAAAAAAAAA420.10299923976751599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)