FastQCFastQC Report
Fri 6 Dec 2024
HLF5YDRX5_l01_n02_LA_1R-exp1.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLF5YDRX5_l01_n02_LA_1R-exp1.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences9531764
Sequences flagged as poor quality0
Sequence length101
%GC38

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCATGCATTACATGTTAATTATTACATGCTTAACGTAATTCAACAGAAA328530.3446686258703006No Hit
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT206430.2165706158901962No Hit
ATTACATGTTAATTATTACATGCTTAACGTAATTCAACAGAAATTATATG184140.1931856474835088No Hit
ATGCATTACATGTTAATTATTACATGCTTAACGTAATTCAACAGAAATTA178500.18726858952865388No Hit
TTTTTAAATAACGTCATGCATTACATGTTAATTATTACATGCTTAACGTA156600.16429277938480222No Hit
ATAACGTCATGCATTACATGTTAATTATTACATGCTTAACGTAATTCAAC147040.15426315632657292No Hit
AAATAACGTCATGCATTACATGTTAATTATTACATGCTTAACGTAATTCA141060.1479893962964253No Hit
CATGCATTACATGTTAATTATTACATGCTTAACGTAATTCAACAGAAATT129390.13574612212387968No Hit
CCCGATCGTTCAAACATTTGGCAATAAAGTTTCTTAAGATTGAATCCTGT95610.10030672181980166No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)