FastQCFastQC Report
Fri 6 Dec 2024
HLF5YDRX5_l01_n01_20-C-KL.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHLF5YDRX5_l01_n01_20-C-KL.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences11535625
Sequences flagged as poor quality0
Sequence length101
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACGGAGGAATATCTCGTAT226400.19626158097198898TruSeq Adapter, Index 2 (97% over 36bp)
GCTGACTCTAGCAGATCTATCGATTCTAGCATCACTGGTGGACAGCAAAT207240.17965216449043722No Hit
CGGGAATTGGATCCGGTACCGAGCTCGAATTCTTACAGCTCGTCCTTCTT170690.14796770872839574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)