HLCT5BCX2_l01_n02_TR_123-7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLCT5BCX2_l01_n02_TR_123-7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1292577
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	1652	0.12780669933009794	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	1562	0.1208438646208311	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	1483	0.11473204304269687	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	1459	0.11287528712022572	No Hit
GTATTATTTTTTCATTTACCTCAAAGTATTTCTGTGTTCCTATTTTGGTT	1332	0.10304995369714919	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	1326	0.1025857647165314	No Hit
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	1311	0.10142529226498692	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	365	0.0	115.182755	1
TGACGCC	145	0.0	74.98521	145
AGCGAAA	620	0.0	65.468414	2
GCGAAAG	715	0.0	58.80186	3
CGAAAGC	700	0.0	57.99754	4
GGTGCGA	265	0.0	51.976913	8
TTATTCG	45	0.009641386	48.33128	4
GGTCGTT	155	1.4551915E-11	46.770397	7
ACTCCGA	390	0.0	44.606583	1
CGAAGCG	315	0.0	43.728302	5
AGTCCGC	100	2.7384795E-6	43.491417	145
GAGCAAA	3350	0.0	42.625916	1
TTACGTG	230	0.0	40.96859	2
GTTATGT	700	0.0	40.38489	1
AGGTCGT	180	7.2759576E-11	40.274506	6
GTATATC	420	0.0	39.694546	1
GTTACGT	240	0.0	39.263084	1
AAGCAGG	4735	0.0	38.734974	7
TCCGAGG	455	0.0	38.23569	3
TACATCG	95	1.02931444E-4	38.156277	4