HLCT5BCX2_l01_n01_TR_199-7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLCT5BCX2_l01_n01_TR_199-7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1065731
Sequences flagged as poor quality	0
Sequence length	151
%GC	43

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	1710	0.1604532475831143	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	1616	0.1516330105814694	No Hit
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	1583	0.1485365444000409	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	1535	0.14403259359069032	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	1522	0.14281277357982455	No Hit
GAGCAAAAGCAGGGTGACAAAAACATAATGGACTCCAACACCATGTCAAG	1304	0.12235733032069068	No Hit
TCTACTAACTTTGGACTTTATTTGTTCTTTTCTGTTTCCTTGAGGTATCA	1294	0.12141900723540931	No Hit
GTATTATTTTTTCATTTACCTCAAAGTATTTCTGTGTTCCTATTTTGGTT	1256	0.11785337951134009	No Hit
GATATGTTCCTTCTATTAACTTTGGACTTTATTTGTTCTTTTCTGTTTCC	1193	0.11194194407406746	No Hit
GCAGTGCAGCAACTAAATATGTAGAGCATATATGAACAAACCTAAGAGAA	1133	0.10631200556237926	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	320	0.0	113.25484	1
AGCGAAA	515	0.0	71.77601	2
CGAAAGC	510	0.0	71.058525	4
ATACCGG	35	0.0035785018	62.090477	8
GCGAAAG	600	0.0	61.607746	3
TTACGTG	260	0.0	61.328976	2
GTTACGT	265	0.0	60.17465	1
TACGTGT	270	0.0	59.05753	3
GATATAC	280	0.0	54.35977	3
GATACCG	40	0.0060712146	54.329163	7
TACCGGA	40	0.0060712146	54.329163	9
TAATCGT	140	5.456968E-12	51.742065	9
GCGACTA	155	0.0	51.437202	4
GGTTATA	150	1.0913936E-11	48.32207	1
GATACGA	45	0.009648189	48.322067	1
GGGTTAC	180	0.0	48.322067	1
AAGCAGG	3555	0.0	47.273758	7
AGCAGGT	850	0.0	46.87222	8
GAGCAAA	2980	0.0	45.48436	1
AGACGAC	195	0.0	44.60289	3