HLCT5BCX2_l01_n01_TR_123-7.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HLCT5BCX2_l01_n01_TR_123-7.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1292577
Sequences flagged as poor quality	0
Sequence length	151
%GC	45

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GTCATGAATGGGTGGGTGGAAGGGACAGCGGTGGGTGTGTGGGGTGCAGC	1745	0.13500162852967368	No Hit
GTTATGTGTTGGCCTTTGGCTCAAGTCATGAATTTAGGGTCCTGGAATTG	1700	0.13152021117504026	No Hit
ACCCCTTACTTGGATGGACTTGACAGATACACACAGAACCCTCCATCCAA	1675	0.12958609042246613	No Hit
ACATTCTACTGAACAACCAATTGGGTTCGTGGGCAAACCAAAATAGGAAC	1625	0.12571784891731788	No Hit
CCCTGTGCCATCCCCCACTGCCACCCTGCTGCACCCCACACACCCACCGC	1453	0.11241109813960792	No Hit
TTACCCACCCAGCATGGAGCAACTAAATATGTAGAGCATATATGAACAAA	1374	0.1062992765614737	No Hit
GTAGCATGTTGTTTAGTCTCTGTGTTTATGAATTTCCAGTTTTCTTCTTG	1296	0.10026481981344246	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GAGCGAA	380	0.0	110.63787	1
TTACGTG	290	0.0	62.48627	2
TACGTGT	290	0.0	62.48627	3
CGAAAGC	695	0.0	60.490303	4
GTTACGT	305	0.0	59.415474	1
AGCGAAA	710	0.0	59.21234	2
GTCGAAG	185	0.0	54.852818	3
GGTTATA	200	0.0	54.36516	1
GCACGTA	40	0.0060565462	54.363052	6
GCGAAAG	775	0.0	54.246143	3
AGTCCGC	145	7.2759576E-12	49.963875	145
ACTCCGA	520	0.0	48.789246	1
TCCGAGG	510	0.0	48.322716	3
GAGCAAA	3095	0.0	45.670246	1
AGACGAC	240	0.0	45.302547	3
GGTCGTT	115	1.4210673E-7	44.098553	7
GTAACTC	205	0.0	42.429703	3
AACGGGT	355	0.0	40.836098	3
CCCGCTC	455	0.0	39.826412	3
ACGTGTT	460	0.0	39.39352	4