FastQCFastQC Report
Thu 22 Sep 2016
HL7Y3BGXY_n01_timecourse_shoot_03.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameHL7Y3BGXY_n01_timecourse_shoot_03.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28087115
Sequences flagged as poor quality0
Sequence length76
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGCGAAT31250.09.4109921
GGGAAAT98200.09.0914851
CGGGGAT98450.08.5349631
GCCGGAT95000.08.3658171
CGGGTAT27900.08.2822031
CCGGGAT102250.08.2177711
CTCGGAT64400.08.2091311
GGAAAAT151950.08.156591
CGGAAAT46500.08.1316171
CGGGCAT70800.08.1099221
CCCGTAT23150.08.0155071
GCCGAAT48550.08.0046041
CCCGGAT63450.07.89060931
CCGGAAT57250.07.88897041
GGCGAAT45050.07.77161551
CGGAGAT202400.07.6630091
CCGGTAT34650.07.5781661
CGACAAT77700.07.5699741
GGGAGAT144250.07.4755131
CGGGAAT48900.07.446131
Produced by FastQC (version 0.11.2)