HL7MJBGXY_n01_chl16.fastq.gz FastQC Report

Basic Statistics

Measure	Value
Filename	HL7MJBGXY_n01_chl16.fastq.gz
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	9617943
Sequences flagged as poor quality	0
Sequence length	76
%GC	46

Per base quality graph

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCCGTCCATCTCGTATGC	52499	0.5458443660978236	TruSeq Adapter, Index 16 (98% over 50bp)

Adapter graph

Kmer graph

Sequence	Count	Obs/Exp Max	Max Obs/Exp Position
TATGCCG	6320	63.13184	46
GTATGCC	7010	57.266922	45
CGTATGC	7170	55.89137	44
ATGCCGT	7205	55.474716	47
TGCCGTC	7545	52.97624	48
TCGTATG	7895	50.80318	43
GCCGTCT	8145	49.33158	49
CTCGTAT	8165	49.036983	42
AAAAGGG	9025	43.89862	70
CCCGTCC	9410	42.026638	33
TCTCGTA	9480	41.939346	41
CCGTCTT	10300	39.316093	50
ACCCGTC	10330	38.48738	32
CATCTCG	10495	37.54999	39
AAAAAGG	10855	36.46626	69
ATCTCGT	11050	35.98073	40
TGAAAAA	11195	35.92747	62
CTGCTTG	11440	35.431587	57
CCGTCCA	11240	35.277817	34
CACCCGT	11375	35.105274	31