[2023-10-10 02:37:55,807] multiqc [DEBUG ] No MultiQC config found: /share/apps/multiqc/1.9/lib/python3.8/site-packages/multiqc_config.yaml [2023-10-10 02:37:55,807] multiqc [DEBUG ] No MultiQC config found: /home/gencore/.multiqc_config.yaml [2023-10-10 02:37:55,807] multiqc [DEBUG ] No MultiQC config found: multiqc_config.yaml [2023-10-10 02:37:55,809] multiqc [DEBUG ] Loading config settings from: /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml [2023-10-10 02:37:55,809] multiqc [DEBUG ] New config 'report_section_order': {'general_stats': {'order': 1000}, 'demux_report': {'order': 900}, 'demux_report-1': {'order': 900}, 'demux_report-2': {'order': 900}, 'undetermined_barcodes': {'order': 800}, 'run_stats': {'order': 700}, 'fastqc': {'order': 500}} [2023-10-10 02:37:55,810] multiqc [DEBUG ] Command used: /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HL557DRX3/merged [2023-10-10 02:37:56,002] multiqc [WARNING] MultiQC Version v1.16 now available! [2023-10-10 02:37:56,002] multiqc [INFO ] This is MultiQC v1.9 [2023-10-10 02:37:56,002] multiqc [DEBUG ] Command : /share/apps/multiqc/1.9/bin/multiqc -f -c /home/gencore/SCRIPTS/hpcpipe/mqc_config.yaml /scratch/gencore/logs/html/HL557DRX3/merged [2023-10-10 02:37:56,002] multiqc [DEBUG ] Working dir : /scratch/gencore/logs/html/HL557DRX3/merged [2023-10-10 02:37:56,002] multiqc [INFO ] Template : default [2023-10-10 02:37:56,002] multiqc [DEBUG ] Running Python 3.8.6 (default, Oct 11 2020, 20:34:31) [GCC Intel(R) C++ gcc 8.3.1 mode] [2023-10-10 02:37:56,002] multiqc [INFO ] Searching : /scratch/gencore/logs/html/HL557DRX3/merged [2023-10-10 02:37:56,003] multiqc [DEBUG ] Analysing modules: custom_content, conpair, peddy, somalier, methylQA, mosdepth, phantompeakqualtools, qualimap, preseq, quast, qorts, rna_seqc, rockhopper, rsem, rseqc, busco, goleft_indexcov, disambiguate, supernova, deeptools, sargasso, verifybamid, mirtrace, happy, mirtop, homer, macs2, theta2, snpeff, gatk, htseq, bcftools, featureCounts, fgbio, dragen, dedup, damageprofiler, biobambam2, mtnucratio, picard, prokka, samblaster, samtools, sexdeterrmine, bamtools, jellyfish, vcftools, longranger, stacks, varscan2, bbmap, bismark, biscuit, hicexplorer, hicup, hicpro, salmon, kallisto, slamdunk, star, hisat2, tophat, bowtie2, bowtie1, snpsplit, kat, leehom, adapterRemoval, clipandmerge, cutadapt, flexbar, kaiju, kraken, malt, trimmomatic, sickle, skewer, sortmerna, biobloomtools, fastq_screen, afterqc, fastp, fastqc, pycoqc, minionqc, multivcfanalyzer, clusterflow, bcl2fastq, interop, ivar, flash, seqyclean [2023-10-10 02:37:56,003] multiqc [DEBUG ] Using temporary directory for creating report: /state/partition1/job-38715218/tmpfcvjqzgy [2023-10-10 02:37:56,129] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl11_fastqc.html [2023-10-10 02:37:56,132] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl11_fastqc.html [2023-10-10 02:37:56,204] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp18_fastqc.html [2023-10-10 02:37:56,206] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp18_fastqc.html [2023-10-10 02:37:56,273] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp01_fastqc.html [2023-10-10 02:37:56,275] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp01_fastqc.html [2023-10-10 02:37:56,339] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS09_fastqc.html [2023-10-10 02:37:56,341] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS09_fastqc.html [2023-10-10 02:37:56,404] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl01_fastqc.html [2023-10-10 02:37:56,406] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl01_fastqc.html [2023-10-10 02:37:56,467] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl11_fastqc.html [2023-10-10 02:37:56,469] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl11_fastqc.html [2023-10-10 02:37:56,544] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl01_fastqc.html [2023-10-10 02:37:56,546] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl01_fastqc.html [2023-10-10 02:37:56,614] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl15_fastqc.html [2023-10-10 02:37:56,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl15_fastqc.html [2023-10-10 02:37:56,675] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS03_fastqc.html [2023-10-10 02:37:56,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS03_fastqc.html [2023-10-10 02:37:56,734] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl02_fastqc.html [2023-10-10 02:37:56,737] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl02_fastqc.html [2023-10-10 02:37:56,797] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS13_fastqc.html [2023-10-10 02:37:56,799] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS13_fastqc.html [2023-10-10 02:37:56,857] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl08_fastqc.html [2023-10-10 02:37:56,859] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl08_fastqc.html [2023-10-10 02:37:56,929] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl16_fastqc.html [2023-10-10 02:37:56,931] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl16_fastqc.html [2023-10-10 02:37:56,987] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl09_fastqc.html [2023-10-10 02:37:56,990] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl09_fastqc.html [2023-10-10 02:37:57,052] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS04_fastqc.html [2023-10-10 02:37:57,054] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS04_fastqc.html [2023-10-10 02:37:57,122] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS17_fastqc.html [2023-10-10 02:37:57,124] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS17_fastqc.html [2023-10-10 02:37:57,182] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS12_fastqc.html [2023-10-10 02:37:57,184] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS12_fastqc.html [2023-10-10 02:37:57,247] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp06_fastqc.html [2023-10-10 02:37:57,250] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp06_fastqc.html [2023-10-10 02:37:57,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp14_fastqc.html [2023-10-10 02:37:57,311] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp14_fastqc.html [2023-10-10 02:37:57,378] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS16_fastqc.html [2023-10-10 02:37:57,381] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS16_fastqc.html [2023-10-10 02:37:57,461] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS04_fastqc.html [2023-10-10 02:37:57,463] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS04_fastqc.html [2023-10-10 02:37:57,528] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp16_fastqc.html [2023-10-10 02:37:57,530] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp16_fastqc.html [2023-10-10 02:37:57,595] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl12_fastqc.html [2023-10-10 02:37:57,597] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl12_fastqc.html [2023-10-10 02:37:57,645] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS15_fastqc.html [2023-10-10 02:37:57,648] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS15_fastqc.html [2023-10-10 02:37:57,708] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl07_fastqc.html [2023-10-10 02:37:57,711] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl07_fastqc.html [2023-10-10 02:37:57,775] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl08_fastqc.html [2023-10-10 02:37:57,777] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl08_fastqc.html [2023-10-10 02:37:57,843] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl15_fastqc.html [2023-10-10 02:37:57,846] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl15_fastqc.html [2023-10-10 02:37:57,910] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp08_fastqc.html [2023-10-10 02:37:57,912] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp08_fastqc.html [2023-10-10 02:37:57,972] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp16_fastqc.html [2023-10-10 02:37:57,975] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp16_fastqc.html [2023-10-10 02:37:58,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl10_fastqc.html [2023-10-10 02:37:58,032] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl10_fastqc.html [2023-10-10 02:37:58,097] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl17_fastqc.html [2023-10-10 02:37:58,100] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl17_fastqc.html [2023-10-10 02:37:58,171] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl17_fastqc.html [2023-10-10 02:37:58,173] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl17_fastqc.html [2023-10-10 02:37:58,238] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS11_fastqc.html [2023-10-10 02:37:58,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS11_fastqc.html [2023-10-10 02:37:58,308] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl04_fastqc.html [2023-10-10 02:37:58,310] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl04_fastqc.html [2023-10-10 02:37:58,381] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS08_fastqc.html [2023-10-10 02:37:58,383] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS08_fastqc.html [2023-10-10 02:37:58,440] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS14_fastqc.html [2023-10-10 02:37:58,443] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS14_fastqc.html [2023-10-10 02:37:58,497] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS08_fastqc.html [2023-10-10 02:37:58,499] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS08_fastqc.html [2023-10-10 02:37:58,563] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp18_fastqc.html [2023-10-10 02:37:58,565] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp18_fastqc.html [2023-10-10 02:37:58,622] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp05_fastqc.html [2023-10-10 02:37:58,624] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp05_fastqc.html [2023-10-10 02:37:58,688] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp07_fastqc.html [2023-10-10 02:37:58,690] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp07_fastqc.html [2023-10-10 02:37:58,748] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp03_fastqc.html [2023-10-10 02:37:58,751] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp03_fastqc.html [2023-10-10 02:37:58,807] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS07_fastqc.html [2023-10-10 02:37:58,810] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS07_fastqc.html [2023-10-10 02:37:58,856] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp12_fastqc.html [2023-10-10 02:37:58,858] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp12_fastqc.html [2023-10-10 02:37:58,926] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp15_fastqc.html [2023-10-10 02:37:58,929] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp15_fastqc.html [2023-10-10 02:37:59,001] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp08_fastqc.html [2023-10-10 02:37:59,004] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp08_fastqc.html [2023-10-10 02:37:59,062] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS10_fastqc.html [2023-10-10 02:37:59,064] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS10_fastqc.html [2023-10-10 02:37:59,130] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp17_fastqc.html [2023-10-10 02:37:59,132] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp17_fastqc.html [2023-10-10 02:37:59,199] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp02_fastqc.html [2023-10-10 02:37:59,201] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp02_fastqc.html [2023-10-10 02:37:59,267] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS02_fastqc.html [2023-10-10 02:37:59,269] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS02_fastqc.html [2023-10-10 02:37:59,331] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl03_fastqc.html [2023-10-10 02:37:59,333] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl03_fastqc.html [2023-10-10 02:37:59,406] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp11_fastqc.html [2023-10-10 02:37:59,409] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp11_fastqc.html [2023-10-10 02:37:59,482] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS18_fastqc.html [2023-10-10 02:37:59,484] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS18_fastqc.html [2023-10-10 02:37:59,553] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp06_fastqc.html [2023-10-10 02:37:59,556] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp06_fastqc.html [2023-10-10 02:37:59,613] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS07_fastqc.html [2023-10-10 02:37:59,616] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS07_fastqc.html [2023-10-10 02:37:59,674] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl03_fastqc.html [2023-10-10 02:37:59,677] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl03_fastqc.html [2023-10-10 02:37:59,745] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS02_fastqc.html [2023-10-10 02:37:59,747] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS02_fastqc.html [2023-10-10 02:37:59,842] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS06_fastqc.html [2023-10-10 02:37:59,844] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS06_fastqc.html [2023-10-10 02:37:59,908] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl13_fastqc.html [2023-10-10 02:37:59,910] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl13_fastqc.html [2023-10-10 02:37:59,973] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS14_fastqc.html [2023-10-10 02:37:59,976] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS14_fastqc.html [2023-10-10 02:38:00,030] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS11_fastqc.html [2023-10-10 02:38:00,033] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS11_fastqc.html [2023-10-10 02:38:00,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl07_fastqc.html [2023-10-10 02:38:00,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl07_fastqc.html [2023-10-10 02:38:00,153] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp11_fastqc.html [2023-10-10 02:38:00,155] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp11_fastqc.html [2023-10-10 02:38:00,218] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl05_fastqc.html [2023-10-10 02:38:00,220] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl05_fastqc.html [2023-10-10 02:38:00,292] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS03_fastqc.html [2023-10-10 02:38:00,295] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS03_fastqc.html [2023-10-10 02:38:00,365] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl04_fastqc.html [2023-10-10 02:38:00,368] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl04_fastqc.html [2023-10-10 02:38:00,435] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS16_fastqc.html [2023-10-10 02:38:00,437] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS16_fastqc.html [2023-10-10 02:38:00,514] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS05_fastqc.html [2023-10-10 02:38:00,517] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS05_fastqc.html [2023-10-10 02:38:00,578] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp03_fastqc.html [2023-10-10 02:38:00,580] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp03_fastqc.html [2023-10-10 02:38:00,658] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_undetermined_fastqc.html [2023-10-10 02:38:00,661] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_undetermined_fastqc.html [2023-10-10 02:38:00,719] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp05_fastqc.html [2023-10-10 02:38:00,722] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp05_fastqc.html [2023-10-10 02:38:00,769] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp04_fastqc.html [2023-10-10 02:38:00,771] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp04_fastqc.html [2023-10-10 02:38:00,820] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_undetermined_fastqc.html [2023-10-10 02:38:00,823] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_undetermined_fastqc.html [2023-10-10 02:38:00,877] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp01_fastqc.html [2023-10-10 02:38:00,880] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp01_fastqc.html [2023-10-10 02:38:00,943] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp13_fastqc.html [2023-10-10 02:38:00,946] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp13_fastqc.html [2023-10-10 02:38:01,018] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp04_fastqc.html [2023-10-10 02:38:01,020] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp04_fastqc.html [2023-10-10 02:38:01,088] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp09_fastqc.html [2023-10-10 02:38:01,090] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp09_fastqc.html [2023-10-10 02:38:01,154] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl16_fastqc.html [2023-10-10 02:38:01,156] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl16_fastqc.html [2023-10-10 02:38:01,207] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl18_fastqc.html [2023-10-10 02:38:01,209] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl18_fastqc.html [2023-10-10 02:38:01,299] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS18_fastqc.html [2023-10-10 02:38:01,301] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS18_fastqc.html [2023-10-10 02:38:01,368] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl18_fastqc.html [2023-10-10 02:38:01,371] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl18_fastqc.html [2023-10-10 02:38:01,426] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS17_fastqc.html [2023-10-10 02:38:01,429] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS17_fastqc.html [2023-10-10 02:38:01,492] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl02_fastqc.html [2023-10-10 02:38:01,495] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl02_fastqc.html [2023-10-10 02:38:01,557] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp17_fastqc.html [2023-10-10 02:38:01,559] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp17_fastqc.html [2023-10-10 02:38:01,628] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl14_fastqc.html [2023-10-10 02:38:01,631] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl14_fastqc.html [2023-10-10 02:38:01,690] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp10_fastqc.html [2023-10-10 02:38:01,693] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp10_fastqc.html [2023-10-10 02:38:01,759] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp09_fastqc.html [2023-10-10 02:38:01,762] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp09_fastqc.html [2023-10-10 02:38:01,826] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp15_fastqc.html [2023-10-10 02:38:01,828] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp15_fastqc.html [2023-10-10 02:38:01,897] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS01_fastqc.html [2023-10-10 02:38:01,899] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS01_fastqc.html [2023-10-10 02:38:01,947] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS15_fastqc.html [2023-10-10 02:38:01,949] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS15_fastqc.html [2023-10-10 02:38:01,994] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS10_fastqc.html [2023-10-10 02:38:01,997] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS10_fastqc.html [2023-10-10 02:38:02,066] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp13_fastqc.html [2023-10-10 02:38:02,068] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp13_fastqc.html [2023-10-10 02:38:02,131] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp10_fastqc.html [2023-10-10 02:38:02,134] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp10_fastqc.html [2023-10-10 02:38:02,210] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl06_fastqc.html [2023-10-10 02:38:02,212] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl06_fastqc.html [2023-10-10 02:38:02,270] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS13_fastqc.html [2023-10-10 02:38:02,272] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_EMS13_fastqc.html [2023-10-10 02:38:02,335] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl10_fastqc.html [2023-10-10 02:38:02,337] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl10_fastqc.html [2023-10-10 02:38:02,393] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS06_fastqc.html [2023-10-10 02:38:02,396] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS06_fastqc.html [2023-10-10 02:38:02,463] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp02_fastqc.html [2023-10-10 02:38:02,465] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp02_fastqc.html [2023-10-10 02:38:02,536] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl06_fastqc.html [2023-10-10 02:38:02,538] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl06_fastqc.html [2023-10-10 02:38:02,599] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl13_fastqc.html [2023-10-10 02:38:02,601] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl13_fastqc.html [2023-10-10 02:38:02,677] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp07_fastqc.html [2023-10-10 02:38:02,679] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp07_fastqc.html [2023-10-10 02:38:02,738] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl09_fastqc.html [2023-10-10 02:38:02,740] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl09_fastqc.html [2023-10-10 02:38:02,787] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp12_fastqc.html [2023-10-10 02:38:02,790] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Cisp12_fastqc.html [2023-10-10 02:38:02,853] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS09_fastqc.html [2023-10-10 02:38:02,855] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS09_fastqc.html [2023-10-10 02:38:02,916] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl14_fastqc.html [2023-10-10 02:38:02,918] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_Ctrl14_fastqc.html [2023-10-10 02:38:02,985] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl12_fastqc.html [2023-10-10 02:38:02,987] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl12_fastqc.html [2023-10-10 02:38:03,034] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS01_fastqc.html [2023-10-10 02:38:03,037] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS01_fastqc.html [2023-10-10 02:38:03,096] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS12_fastqc.html [2023-10-10 02:38:03,098] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS12_fastqc.html [2023-10-10 02:38:03,167] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl05_fastqc.html [2023-10-10 02:38:03,170] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Ctrl05_fastqc.html [2023-10-10 02:38:03,239] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp14_fastqc.html [2023-10-10 02:38:03,241] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n02_Cisp14_fastqc.html [2023-10-10 02:38:03,288] multiqc [DEBUG ] File ignored by hicexplorer because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS05_fastqc.html [2023-10-10 02:38:03,290] multiqc [DEBUG ] File ignored by longranger/invocation because it exceeded search pattern filesize limit: HL557DRX3_n01_EMS05_fastqc.html [2023-10-10 02:38:03,861] multiqc.plots.bargraph [DEBUG ] Using matplotlib version 3.3.2 [2023-10-10 02:38:03,864] multiqc.plots.linegraph [DEBUG ] Using matplotlib version 3.3.2 [2023-10-10 02:38:03,873] multiqc.modules.custom_content.custom_content [INFO ] run_stats: Found 1 samples (table) [2023-10-10 02:38:03,882] multiqc.modules.custom_content.custom_content [INFO ] undetermined_barcodes: Found 20 samples (table) [2023-10-10 02:38:03,907] multiqc.modules.custom_content.custom_content [INFO ] demux_report: Found 55 samples (table) [2023-10-10 02:38:03,913] multiqc [DEBUG ] No samples found: conpair [2023-10-10 02:38:03,919] multiqc [DEBUG ] No samples found: peddy [2023-10-10 02:38:03,924] multiqc [DEBUG ] No samples found: somalier [2023-10-10 02:38:03,929] multiqc [DEBUG ] No samples found: methylQA [2023-10-10 02:38:03,938] multiqc [DEBUG ] No samples found: mosdepth [2023-10-10 02:38:03,943] multiqc [DEBUG ] No samples found: phantompeakqualtools [2023-10-10 02:38:03,946] multiqc [DEBUG ] No samples found: qualimap [2023-10-10 02:38:03,952] multiqc [DEBUG ] No samples found: preseq [2023-10-10 02:38:03,957] multiqc [DEBUG ] No samples found: quast [2023-10-10 02:38:03,962] multiqc [DEBUG ] No samples found: qorts [2023-10-10 02:38:03,967] multiqc [DEBUG ] No samples found: rna_seqc [2023-10-10 02:38:03,972] multiqc [DEBUG ] No samples found: rockhopper [2023-10-10 02:38:03,978] multiqc [DEBUG ] No samples found: rsem [2023-10-10 02:38:03,989] multiqc [DEBUG ] No samples found: rseqc [2023-10-10 02:38:03,995] multiqc [DEBUG ] No samples found: busco [2023-10-10 02:38:04,000] multiqc [DEBUG ] No samples found: goleft_indexcov [2023-10-10 02:38:04,004] multiqc [DEBUG ] No samples found: disambiguate [2023-10-10 02:38:04,010] multiqc [DEBUG ] No samples found: supernova [2023-10-10 02:38:04,024] multiqc [DEBUG ] No samples found: deeptools [2023-10-10 02:38:04,029] multiqc [DEBUG ] No samples found: sargasso [2023-10-10 02:38:04,035] multiqc [DEBUG ] No samples found: verifybamid [2023-10-10 02:38:04,040] multiqc [DEBUG ] No samples found: mirtrace [2023-10-10 02:38:04,045] multiqc [DEBUG ] No samples found: happy [2023-10-10 02:38:04,050] multiqc [DEBUG ] No samples found: mirtop [2023-10-10 02:38:04,057] multiqc [DEBUG ] No samples found: homer [2023-10-10 02:38:04,062] multiqc [DEBUG ] No samples found: macs2 [2023-10-10 02:38:04,067] multiqc [DEBUG ] No samples found: theta2 [2023-10-10 02:38:04,072] multiqc [DEBUG ] No samples found: snpeff [2023-10-10 02:38:04,079] multiqc [DEBUG ] No samples found: gatk [2023-10-10 02:38:04,084] multiqc [DEBUG ] No samples found: htseq [2023-10-10 02:38:04,090] multiqc [DEBUG ] No samples found: bcftools [2023-10-10 02:38:04,095] multiqc [DEBUG ] No samples found: featureCounts [2023-10-10 02:38:04,102] multiqc [DEBUG ] No samples found: fgbio [2023-10-10 02:38:04,117] multiqc [DEBUG ] No samples found: dragen [2023-10-10 02:38:04,122] multiqc [DEBUG ] No samples found: dedup [2023-10-10 02:38:04,128] multiqc [DEBUG ] No samples found: damageprofiler [2023-10-10 02:38:04,154] multiqc [DEBUG ] No samples found: biobambam2 [2023-10-10 02:38:04,159] multiqc [DEBUG ] No samples found: mtnucratio [2023-10-10 02:38:04,161] multiqc [DEBUG ] No samples found: picard [2023-10-10 02:38:04,166] multiqc [DEBUG ] No samples found: prokka [2023-10-10 02:38:04,171] multiqc [DEBUG ] No samples found: samblaster [2023-10-10 02:38:04,181] multiqc [DEBUG ] No samples found: samtools [2023-10-10 02:38:04,187] multiqc [DEBUG ] No samples found: sexdeterrmine [2023-10-10 02:38:04,193] multiqc [DEBUG ] No samples found: bamtools [2023-10-10 02:38:04,197] multiqc [DEBUG ] No samples found: jellyfish [2023-10-10 02:38:04,206] multiqc [DEBUG ] No samples found: vcftools [2023-10-10 02:38:04,211] multiqc [DEBUG ] No samples found: longranger [2023-10-10 02:38:04,216] multiqc [DEBUG ] No samples found: stacks [2023-10-10 02:38:04,222] multiqc [DEBUG ] No samples found: varscan2 [2023-10-10 02:38:04,238] multiqc [DEBUG ] No samples found: bbmap [2023-10-10 02:38:04,244] multiqc [DEBUG ] No samples found: bismark [2023-10-10 02:38:04,250] multiqc [DEBUG ] No samples found: biscuit [2023-10-10 02:38:04,255] multiqc [DEBUG ] No samples found: hicexplorer [2023-10-10 02:38:04,261] multiqc [DEBUG ] No samples found: hicup [2023-10-10 02:38:04,267] multiqc [DEBUG ] No samples found: hicpro [2023-10-10 02:38:04,271] multiqc [DEBUG ] No samples found: salmon [2023-10-10 02:38:04,276] multiqc [DEBUG ] No samples found: kallisto [2023-10-10 02:38:04,282] multiqc [DEBUG ] No samples found: slamdunk [2023-10-10 02:38:04,287] multiqc [DEBUG ] No samples found: star [2023-10-10 02:38:04,291] multiqc [DEBUG ] No samples found: hisat2 [2023-10-10 02:38:04,296] multiqc [DEBUG ] No samples found: tophat [2023-10-10 02:38:04,301] multiqc [DEBUG ] No samples found: bowtie2 [2023-10-10 02:38:04,306] multiqc [DEBUG ] No samples found: bowtie1 [2023-10-10 02:38:04,311] multiqc [DEBUG ] No samples found: snpsplit [2023-10-10 02:38:04,315] multiqc [DEBUG ] No samples found: kat [2023-10-10 02:38:04,320] multiqc [DEBUG ] No samples found: leehom [2023-10-10 02:38:04,325] multiqc [DEBUG ] No samples found: adapterRemoval [2023-10-10 02:38:04,329] multiqc [DEBUG ] No samples found: clipandmerge [2023-10-10 02:38:04,335] multiqc [DEBUG ] No samples found: cutadapt [2023-10-10 02:38:04,340] multiqc [DEBUG ] No samples found: flexbar [2023-10-10 02:38:04,344] multiqc [DEBUG ] No samples found: kaiju [2023-10-10 02:38:04,349] multiqc [DEBUG ] No samples found: kraken [2023-10-10 02:38:04,354] multiqc [DEBUG ] No samples found: malt [2023-10-10 02:38:04,359] multiqc [DEBUG ] No samples found: trimmomatic [2023-10-10 02:38:04,364] multiqc [DEBUG ] No samples found: sickle [2023-10-10 02:38:04,368] multiqc [DEBUG ] No samples found: skewer [2023-10-10 02:38:04,373] multiqc [DEBUG ] No samples found: sortmerna [2023-10-10 02:38:04,377] multiqc [DEBUG ] No samples found: biobloomtools [2023-10-10 02:38:04,382] multiqc [DEBUG ] No samples found: fastq_screen [2023-10-10 02:38:04,387] multiqc [DEBUG ] No samples found: afterqc [2023-10-10 02:38:04,392] multiqc [DEBUG ] No samples found: fastp [2023-10-10 02:38:11,872] multiqc.modules.fastqc.fastqc [INFO ] Found 110 reports [2023-10-10 02:38:27,852] multiqc [DEBUG ] No samples found: pycoqc [2023-10-10 02:38:27,857] multiqc [DEBUG ] No samples found: minionqc [2023-10-10 02:38:27,862] multiqc [DEBUG ] No samples found: multivcfanalyzer [2023-10-10 02:38:27,868] multiqc [DEBUG ] No samples found: clusterflow [2023-10-10 02:38:27,873] multiqc [DEBUG ] No samples found: bcl2fastq [2023-10-10 02:38:27,878] multiqc [DEBUG ] No samples found: interop [2023-10-10 02:38:27,883] multiqc [DEBUG ] No samples found: ivar [2023-10-10 02:38:27,888] multiqc [DEBUG ] No samples found: flash [2023-10-10 02:38:27,893] multiqc [DEBUG ] No samples found: seqyclean [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Demultiplexing Report'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Demultiplexing Report'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Demultiplexing Report'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Demultiplexing Report'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Demultiplexing Report'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Demultiplexing Report'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module ' Barcodes of Undetermined Reads'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module ' Barcodes of Undetermined Reads'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module ' Barcodes of Undetermined Reads'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module ' Barcodes of Undetermined Reads'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module ' Barcodes of Undetermined Reads'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module ' Barcodes of Undetermined Reads'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'Run Statistics'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'Run Statistics'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'Run Statistics'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'Run Statistics'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'Run Statistics'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'Run Statistics'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'Run Statistics'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'general_stats' not found for module 'FastQC'. [2023-10-10 02:38:27,893] multiqc [DEBUG ] Reordering sections: anchor 'demux_report' not found for module 'FastQC'. [2023-10-10 02:38:27,894] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-1' not found for module 'FastQC'. [2023-10-10 02:38:27,894] multiqc [DEBUG ] Reordering sections: anchor 'demux_report-2' not found for module 'FastQC'. [2023-10-10 02:38:27,894] multiqc [DEBUG ] Reordering sections: anchor 'undetermined_barcodes' not found for module 'FastQC'. [2023-10-10 02:38:27,894] multiqc [DEBUG ] Reordering sections: anchor 'run_stats' not found for module 'FastQC'. [2023-10-10 02:38:27,894] multiqc [DEBUG ] Reordering sections: anchor 'fastqc' not found for module 'FastQC'. [2023-10-10 02:38:28,017] multiqc [INFO ] Compressing plot data [2023-10-10 02:38:28,058] multiqc [INFO ] Report : multiqc_report.html [2023-10-10 02:38:28,058] multiqc [INFO ] Data : multiqc_data [2023-10-10 02:38:28,058] multiqc [DEBUG ] Moving data file from '/state/partition1/job-38715218/tmpfcvjqzgy/multiqc_data' to '/scratch/gencore/logs/html/HL557DRX3/merged/multiqc_data' [2023-10-10 02:38:28,215] multiqc [INFO ] MultiQC complete